CX293939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1) HSP 1 Score: 259.61 bits (662), Expect = 5.821e-69 Identity = 123/157 (78.34%), Postives = 143/157 (91.08%), Query Frame = 3 Query: 30 LSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQR 500 +S TPKQ+LI CA LS+G +EEA +++NELRQ+VSIQGDP QRIAAYMVEGLAARMAASGKF+Y+ALKCKEPPS +RLAAMQ+LFEVCPCFKFGF+AANGAI+EA KGE+ VHIIDFDINQG+QY+TLI++IA LPG RP LRLTG+DDPESVQR Sbjct: 217 VSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQR 373
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.463e-43 Identity = 84/148 (56.76%), Postives = 112/148 (75.68%), Query Frame = 3 Query: 48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 K+LLI CA + + N +I ELR++VS+ G+P +R+ AYMVEGL AR+A+SG +YKALKCKEP SSD L+ M L+E CP FKFG+M+ANGAI EA KGE R+HIIDF I+QG+Q+I+L+Q +A+ PG P +R+TG+DD S Sbjct: 175 KELLIACARAVEEKNSFAIDMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPKSSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVS 322
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42 Identity = 82/155 (52.90%), Postives = 115/155 (74.19%), Query Frame = 3 Query: 30 LSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKAL-KCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 +S R + L+ CA +S+ ++ A +++ +LRQMVS+ G+P QR+ AY++EGL A++A+SG +YKAL +C EP S++ L+ M IL+EVCP FKFG+M+ANGAI EA K E RVHIIDF I QGSQ++TLIQ A+ PG P +R+TG+DD S Sbjct: 114 ISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTS 268
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42 Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 3 Query: 48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 KQLL CA LS+ EE ++ E R +VSI G+P QR+ AY++EGL AR SG +Y+ALKC+EP S + L+ M+IL+ +CP FKFG+MAANGAI EA + E +HIIDF I QG+Q+ITLIQ +A+ PG P +R+TG+DDP S Sbjct: 202 KQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPESKELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVS 349
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 5.135e-41 Identity = 77/159 (48.43%), Postives = 113/159 (71.07%), Query Frame = 3 Query: 15 REVSQLSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 R + +S K +L +CA + + ++E +I++L+QMVS+ G+P QR+ AYM+EGL AR+A+SG +YKAL+CK+P + L M IL+E CP FKFG+ +ANGAI EA K E VHIIDF I+QG Q+++LI+ + + PG P++R+TG+DDP S Sbjct: 217 RSMEMISRGDLKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRS 375
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40 Identity = 82/154 (53.25%), Postives = 110/154 (71.43%), Query Frame = 3 Query: 21 VSQLSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDD 482 V +S K +L+ CA +S+ N+ A + ELR MVSI G+P QR+ AYM+EGL AR+AASG +YK+L+ +EP S + L+ + +L EVCP FKFG+M+ANGAI EA K E+R+HIIDF I QGSQ+I LIQ A+ PG P++R+TGV D Sbjct: 42 VEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGD 195
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 5.690e-32 Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 3 Query: 132 MVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491 MVS+ G P QR+ YM EGL AR+ SG +YK+LKC EP + ++ M +L+E+CP +KF + AN I+EA GE RVHIIDF I QGSQY+ LIQ +A PG P LR+TGVDD +S Sbjct: 1 MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQS 120
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24 Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 3 Query: 54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS---SDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESV 494 LL+ CA ++ G+++ A + +L + S GD QRIAAY E LA R+ S LYKAL + + S+ + ++ FE+ P K ++ N AI+EA +GEK VH+ID D ++ +Q++ L+Q S P PHLR+TGV + V Sbjct: 57 LLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGVHHQKEV 206
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22 Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3 Query: 54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL---AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476 LL+ CA +S N+EEA ++ E+ Q+ + G QR+AAY E ++AR+ S +Y AL + P + L +A Q+ + P KF AN AI EAF+ E VHIID DI QG Q+ L +AS PG PH+RLTG+ Sbjct: 293 LLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGL 436
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21 Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 3 Query: 54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKE--PPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476 LL+ CA +S N+E+A ++ E+ Q+ + G QR+AAY E ++AR+ +S +Y L P + +A Q+ + P KF AN AI EAF+ E+RVHIID DI QG Q+ L +AS PG P++RLTG+ Sbjct: 450 LLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHTPHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGL 592 The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bpback to top |