CX293939

Overview
NameCX293939
Unique NameCX293939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig525 contig Ccv1_Contig525:1..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL1_ARATH (Scarecrow-like protein 1 OS=Arabidopsis thaliana GN=SCL1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 5.821e-69
Identity = 123/157 (78.34%), Postives = 143/157 (91.08%), Query Frame = 3
Query:   30 LSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQR 500
            +S  TPKQ+LI CA  LS+G +EEA +++NELRQ+VSIQGDP QRIAAYMVEGLAARMAASGKF+Y+ALKCKEPPS +RLAAMQ+LFEVCPCFKFGF+AANGAI+EA KGE+ VHIIDFDINQG+QY+TLI++IA LPG RP LRLTG+DDPESVQR
Sbjct:  217 VSQATPKQILISCARALSEGKLEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPPSDERLAAMQVLFEVCPCFKFGFLAANGAILEAIKGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVQR 373          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.463e-43
Identity = 84/148 (56.76%), Postives = 112/148 (75.68%), Query Frame = 3
Query:   48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            K+LLI CA  + + N      +I ELR++VS+ G+P +R+ AYMVEGL AR+A+SG  +YKALKCKEP SSD L+ M  L+E CP FKFG+M+ANGAI EA KGE R+HIIDF I+QG+Q+I+L+Q +A+ PG  P +R+TG+DD  S
Sbjct:  175 KELLIACARAVEEKNSFAIDMMIPELRKIVSVSGEPLERLGAYMVEGLVARLASSGISIYKALKCKEPKSSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVS 322          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42
Identity = 82/155 (52.90%), Postives = 115/155 (74.19%), Query Frame = 3
Query:   30 LSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKAL-KCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            +S R  +  L+ CA  +S+ ++  A +++ +LRQMVS+ G+P QR+ AY++EGL A++A+SG  +YKAL +C EP S++ L+ M IL+EVCP FKFG+M+ANGAI EA K E RVHIIDF I QGSQ++TLIQ  A+ PG  P +R+TG+DD  S
Sbjct:  114 ISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGEPIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEPASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTS 268          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.922e-42
Identity = 81/148 (54.73%), Postives = 107/148 (72.30%), Query Frame = 3
Query:   48 KQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            KQLL  CA  LS+   EE   ++ E R +VSI G+P QR+ AY++EGL AR   SG  +Y+ALKC+EP S + L+ M+IL+ +CP FKFG+MAANGAI EA + E  +HIIDF I QG+Q+ITLIQ +A+ PG  P +R+TG+DDP S
Sbjct:  202 KQLLTRCAEALSEDRTEEFHKLVQEARGVVSINGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPESKELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVS 349          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL5_ARATH (Scarecrow-like protein 5 OS=Arabidopsis thaliana GN=SCL5 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.135e-41
Identity = 77/159 (48.43%), Postives = 113/159 (71.07%), Query Frame = 3
Query:   15 REVSQLSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            R +  +S    K +L +CA  + + ++E    +I++L+QMVS+ G+P QR+ AYM+EGL AR+A+SG  +YKAL+CK+P   + L  M IL+E CP FKFG+ +ANGAI EA K E  VHIIDF I+QG Q+++LI+ + + PG  P++R+TG+DDP S
Sbjct:  217 RSMEMISRGDLKGVLYECAKAVENYDLEMTDWLISQLQQMVSVSGEPVQRLGAYMLEGLVARLASSGSSIYKALRCKDPTGPELLTYMHILYEACPYFKFGYESANGAIAEAVKNESFVHIIDFQISQGGQWVSLIRALGARPGGPPNVRITGIDDPRS 375          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL21_ARATH (Scarecrow-like protein 21 OS=Arabidopsis thaliana GN=SCL21 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.548e-40
Identity = 82/154 (53.25%), Postives = 110/154 (71.43%), Query Frame = 3
Query:   21 VSQLSPRTPKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDD 482
            V  +S    K +L+ CA  +S+ N+  A   + ELR MVSI G+P QR+ AYM+EGL AR+AASG  +YK+L+ +EP S + L+ + +L EVCP FKFG+M+ANGAI EA K E+R+HIIDF I QGSQ+I LIQ  A+ PG  P++R+TGV D
Sbjct:   42 VEAISRGDLKLVLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKSLQSREPESYEFLSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGSQWIALIQAFAARPGGAPNIRITGVGD 195          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL13_ARATH (Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.690e-32
Identity = 65/120 (54.17%), Postives = 83/120 (69.17%), Query Frame = 3
Query:  132 MVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPES 491
            MVS+ G P QR+  YM EGL AR+  SG  +YK+LKC EP   + ++ M +L+E+CP +KF +  AN  I+EA  GE RVHIIDF I QGSQY+ LIQ +A  PG  P LR+TGVDD +S
Sbjct:    1 MVSVSGSPIQRLGTYMAEGLRARLEGSGSNIYKSLKCNEPTGRELMSYMSVLYEICPYWKFAYTTANVEILEAIAGETRVHIIDFQIAQGSQYMFLIQELAKHPGGPPLLRVTGVDDSQS 120          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCL3_ARATH (Scarecrow-like protein 3 OS=Arabidopsis thaliana GN=SCL3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 57/150 (38.00%), Postives = 87/150 (58.00%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPS---SDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESV 494
            LL+ CA  ++ G+++ A   + +L  + S  GD  QRIAAY  E LA R+  S   LYKAL   +  +   S+ +   ++ FE+ P  K  ++  N AI+EA +GEK VH+ID D ++ +Q++ L+Q   S P   PHLR+TGV   + V
Sbjct:   57 LLLTCANHVASGSLQNANAALEQLSHLASPDGDTMQRIAAYFTEALANRILKSWPGLYKALNATQTRTNNVSEEIHVRRLFFEMFPILKVSYLLTNRAILEAMEGEKMVHVIDLDASEPAQWLALLQAFNSRPEGPPHLRITGVHHQKEV 206          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_ARATH (Protein SCARECROW OS=Arabidopsis thaliana GN=SCR PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 60/144 (41.67%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPPSSDRL---AAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA  +S  N+EEA  ++ E+ Q+ +  G   QR+AAY  E ++AR+  S   +Y AL  +  P +  L   +A Q+   + P  KF    AN AI EAF+ E  VHIID DI QG Q+  L   +AS PG  PH+RLTG+
Sbjct:  293 LLLQCAEAVSADNLEEANKLLLEISQLSTPYGTSAQRVAAYFSEAMSARLLNSCLGIYAALPSRWMPQTHSLKMVSAFQVFNGISPLVKFSHFTANQAIQEAFEKEDSVHIIDLDIMQGLQWPGLFHILASRPGGPPHVRLTGL 436          
BLAST of CX293939 vs. ExPASy Swiss-Prot
Match: SCR_PEA (Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.460e-21
Identity = 57/143 (39.86%), Postives = 83/143 (58.04%), Query Frame = 3
Query:   54 LLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKE--PPSSDRLAAMQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV 476
            LL+ CA  +S  N+E+A  ++ E+ Q+ +  G   QR+AAY  E ++AR+ +S   +Y  L      P +    +A Q+   + P  KF    AN AI EAF+ E+RVHIID DI QG Q+  L   +AS PG  P++RLTG+
Sbjct:  450 LLLQCAEAVSAENLEQANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPVSSHTPHNQKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGL 592          
The following BLAST results are available for this feature:
BLAST of CX293939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
SCL1_ARATH5.821e-6978.34Scarecrow-like protein 1 OS=Arabidopsis thaliana G... [more]
CIGR2_ORYSJ2.463e-4356.76Chitin-inducible gibberellin-responsive protein 2 ... [more]
PAT1_ARATH7.922e-4252.90Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
CIGR1_ORYSJ7.922e-4254.73Chitin-inducible gibberellin-responsive protein 1 ... [more]
SCL5_ARATH5.135e-4148.43Scarecrow-like protein 5 OS=Arabidopsis thaliana G... [more]
SCL21_ARATH2.548e-4053.25Scarecrow-like protein 21 OS=Arabidopsis thaliana ... [more]
SCL13_ARATH5.690e-3254.17Scarecrow-like protein 13 OS=Arabidopsis thaliana ... [more]
SCL3_ARATH7.449e-2438.00Scarecrow-like protein 3 OS=Arabidopsis thaliana G... [more]
SCR_ARATH1.835e-2241.67Protein SCARECROW OS=Arabidopsis thaliana GN=SCR P... [more]
SCR_PEA3.460e-2139.86Protein SCARECROW OS=Pisum sativum GN=SCR PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC05002G10SK FlavRip1 Citrus clementina cDNA clone C05002G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293939 ID=CX293939; Name=CX293939; organism=Citrus clementina; type=EST; length=505bp
CCGAATTCTGCACGAGGGAAGTATCACAATTATCTCCTCGGACTCCTAAG
CAGTTGCTTATAGATTGTGCTGCTACACTTTCTGATGGAAACATTGAGGA
AGCAACAACTATAATAAATGAACTCCGGCAGATGGTTTCAATTCAAGGAG
ATCCTCCTCAGAGGATTGCAGCTTACATGGTGGAAGGTCTTGCAGCTCGC
ATGGCTGCCTCTGGCAAGTTTCTCTATAAAGCTCTAAAATGCAAAGAGCC
CCCTTCTTCTGACAGACTAGCAGCAATGCAGATCCTCTTTGAGGTGTGTC
CTTGTTTTAAATTTGGATTTATGGCAGCAAATGGTGCAATTATAGAGGCA
TTTAAAGGTGAAAAGAGAGTACATATAATAGATTTTGACATAAATCAAGG
TAGTCAATATATAACACTGATACAAACAATTGCTTCTCTGCCTGGTAATC
GACCTCACTTGAGGTTAACTGGGGTTGATGATCCAGAGTCAGTTCAACGT
CTGGT
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