CX293941

Overview
NameCX293941
Unique NameCX293941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293941 vs. ExPASy Swiss-Prot
Match: RL4_PRUAR (60S ribosomal protein L4 OS=Prunus armeniaca GN=RPL4 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.066e-18
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    1 RMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 192
            RMSLLAEA+RV            PI+KEEA+ IK+AGKAWYQTMISDSDYTEF+NF+KWLGVSQ
Sbjct:  345 RMSLLAEAERVKAKKEKLDKKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408          
BLAST of CX293941 vs. ExPASy Swiss-Prot
Match: RL4B_ARATH (60S ribosomal protein L4-2 OS=Arabidopsis thaliana GN=RPL4D PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 44/64 (68.75%), Postives = 48/64 (75.00%), Query Frame = 1
Query:    1 RMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 192
            RMSLLAEA RV             +TKEEA AIK+AGKAWYQTMISDSDYTEF+NF+KWLG SQ
Sbjct:  344 RMSLLAEASRVKAKKEKLEKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407          
BLAST of CX293941 vs. ExPASy Swiss-Prot
Match: RL4A_ARATH (60S ribosomal protein L4-1 OS=Arabidopsis thaliana GN=RPL4A PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.010e-17
Identity = 43/64 (67.19%), Postives = 49/64 (76.56%), Query Frame = 1
Query:    1 RMSLLAEAQRVXXXXXXXXXXXXPITKEEAAAIKSAGKAWYQTMISDSDYTEFENFSKWLGVSQ 192
            RMSLLAEAQRV             +TKEEA AIK+AGK+WY+TMISDSDYTEF+NF+KWLG SQ
Sbjct:  343 RMSLLAEAQRVKAKKEKLAKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406          
The following BLAST results are available for this feature:
BLAST of CX293941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RL4_PRUAR1.066e-1870.3160S ribosomal protein L4 OS=Prunus armeniaca GN=RP... [more]
RL4B_ARATH1.539e-1768.7560S ribosomal protein L4-2 OS=Arabidopsis thaliana... [more]
RL4A_ARATH2.010e-1767.1960S ribosomal protein L4-1 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionC05002H02SK FlavRip1 Citrus clementina cDNA clone C05002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293941 ID=CX293941; Name=CX293941; organism=Citrus clementina; type=EST; length=529bp
CGGATGTCACTTTTGGCTGAGGCACAACGGGTTAAAGCTAAGAAGGAGAA
GCTCGACAAGAAGAGGAAGCCCATCACTAAGGAGGAGGCAGCTGCAATCA
AGTCTGCCGGCAAGGCATGGTACCAGACTATGATCTCAGACAGTGATTAT
ACCGAGTTCGAGAACTTCTCGAAGTGGCTTGGTGTTTCTCAGTAATCTGA
TTGTTGGTTTTTAAATTTTGATTTTTGAGACAATATCTTGTTAATCTTTG
TGGATTTGCTGTTGAATTTTAGTATCTTTTGCTGTTTTGAGTCATGGATG
AGAATGTTTGGAAGGAAGATAAGCTGAATGGTCAATGTTTTTCCTCCCAG
CGTTTTTGTCTTTATGGGCAAGGTGAAAGAACTTTCTTTGAAGTTAGAAT
TGGAGTTATATGTTTTAGGAGGTGGATTTATTGTCTTAATGGTACTATTT
ATACTTAAAAATTATAATGCTGCTCTTATCATTTGATTGATGTCATAAGC
TAAAATTGGATTGAAAAAAAAAAAAAAAA
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