CX293945

Overview
NameCX293945
Unique NameCX293945
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig526 contig Ccv1_Contig526:1..502. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_MOUSE (Actin-related protein 2/3 complex subunit 3 OS=Mus musculus GN=Arpc3 PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 6.636e-20
Identity = 51/100 (51.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGL 504
            YHSS +D +  TK  G   LLPL+S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPLRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI 100          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_HUMAN (Actin-related protein 2/3 complex subunit 3 OS=Homo sapiens GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGL 504
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI 100          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_BOVIN (Actin-related protein 2/3 complex subunit 3 OS=Bos taurus GN=ARPC3 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGL 504
            YHSS +D +  TK  G   LLP++S  KGPAP   +D TDIVDEAI +F+ANVFF+N++IK+ AD+ LIY+T YI+  LK+L+   + ++G K +  LG+
Sbjct:    4 YHSSLMDPD--TKLIGNMALLPIRSQFKGPAPRETKD-TDIVDEAIYYFKANVFFKNYEIKNEADRTLIYITLYISECLKKLQKCNSKSQGEKEMYTLGI 100          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_DICDI (Actin-related protein 2/3 complex subunit 3 OS=Dictyostelium discoideum GN=arcC PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.083e-17
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  202 MVYHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRL 450
            MVYHS F DE    +  G  P+LPLK+  KGPAP  D +  DI+DEA+  F+AN+ FRNF+++ + D++LIYLT YI   L ++
Sbjct:    1 MVYHSQFNDESAGFRLVGNVPILPLKTTHKGPAPKGDANSVDIIDEALDLFKANILFRNFEVQGNGDRVLIYLTLYITKCLLKI 84          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_SCHPO (Actin-related protein 2/3 complex subunit 3 OS=Schizosaccharomyces pombe GN=arc3 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.209e-15
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACGCPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEG 456
            YHSSF+    V       +LPLK+  +GPA  +D+ + DI+DE I  FRAN FFRNF+IK  AD+ LIY T +I+  L R+ G
Sbjct:    4 YHSSFLSLTDVPTTGNIAMLPLKTKFRGPAYPADESQMDIIDECIGLFRANCFFRNFEIKGPADRTLIYGTLFISECLGRVNG 86          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_CAEEL (Probable actin-related protein 2/3 complex subunit 3 OS=Caenorhabditis elegans GN=arx-5 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.922e-15
Identity = 43/101 (42.57%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACGCPL--LPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGL 504
            YHS F  E  V       +  LP++++ KGPAP ++QD  DI+DEA+T+F+ N+FFR F+IK  AD+ +IYL FYI   L++L+       G K +  L L
Sbjct:    4 YHSKFDTELKVLPLGNTNMGKLPIRTNFKGPAPQTNQD--DIIDEALTYFKPNIFFREFEIKGPADRTMIYLIFYITECLRKLQKSPNKIAGQKDLHALAL 102          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_YEAST (Actin-related protein 2/3 complex subunit 3 OS=Saccharomyces cerevisiae GN=ARC18 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.068e-13
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  208 YHSSFVDEEGVTKACG-CPLLPLKSHIKGPAPASDQDRTDIVDEAITFFRANVFFRNFDIKSSADKLLIYLTFYINVALKRLEGRRTLAEGTKAIINLGL 504
            YHS+F  +    +  G   LLPL +  +GPA  S+ D  DI+DE +  FRAN FF+NF+IKS AD++LIY   +IN  L  L+   +  E  K + N+ L
Sbjct:    4 YHSTFPVDPNTDRMVGNFALLPLNTKFRGPAYPSNSDY-DIIDECLDLFRANSFFKNFEIKSPADRVLIYGILFINDCLAHLKITTSFNEAVKVLTNVAL 102          
BLAST of CX293945 vs. ExPASy Swiss-Prot
Match: ARPC3_ENTHI (Probable actin-related protein 2/3 complex subunit 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  196 REMVYHSSFVDEEGVTKACGCPLLPLKSHIK-GPAPASDQDRTDIVDEAITFFRANVFFRNFDIK-SSADKLLIYLTFYINVALKRLEGR 459
            R   YHS  +D++ V KA   PL+  K+ +K  P      D  DIVDEAIT+++ANVF++N D+    ADKLL YL FY+   L    GR
Sbjct:    5 RSGAYHSE-LDKDIVQKAGNFPLMQFKTKVKVNPKFLLKGDDMDIVDEAITYYKANVFYKNLDMSICEADKLLAYLMFYLQSLLLTFTGR 93          
The following BLAST results are available for this feature:
BLAST of CX293945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
ARPC3_MOUSE6.636e-2051.00Actin-related protein 2/3 complex subunit 3 OS=Mus... [more]
ARPC3_HUMAN1.132e-1950.00Actin-related protein 2/3 complex subunit 3 OS=Hom... [more]
ARPC3_BOVIN1.132e-1950.00Actin-related protein 2/3 complex subunit 3 OS=Bos... [more]
ARPC3_DICDI3.083e-1748.81Actin-related protein 2/3 complex subunit 3 OS=Dic... [more]
ARPC3_SCHPO2.209e-1548.19Actin-related protein 2/3 complex subunit 3 OS=Sch... [more]
ARPC3_CAEEL4.922e-1542.57Probable actin-related protein 2/3 complex subunit... [more]
ARPC3_YEAST2.068e-1342.00Actin-related protein 2/3 complex subunit 3 OS=Sac... [more]
ARPC3_ENTHI9.605e-1144.44Probable actin-related protein 2/3 complex subunit... [more]
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Properties
Property NameValue
Genbank descriptionC05002H07SK FlavRip1 Citrus clementina cDNA clone C05002H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293945 ID=CX293945; Name=CX293945; organism=Citrus clementina; type=EST; length=506bp
GCACGAGGGCCTGAAGATATAAAATTAAATTGAGATTAATTCCTCTCCGA
TTGAGCGAATGTGACACCTTCAAATCTTCGGATCCAACCAACAGAGAAAA
CATATCATTTTTCTTTTGCCGAGAAATTGATACTTGCAGGAAAATTAGGG
TTTTGCAAATTGGGGCGAAAACAGATTCTTTTTAGCTCCAGTCATCGAGA
AATGGTTTATCATTCGAGTTTTGTTGATGAGGAAGGAGTTACTAAAGCTT
GTGGTTGCCCTTTACTTCCTTTAAAAAGCCATATAAAGGGTCCTGCCCCT
GCTTCTGATCAAGATAGAACTGATATTGTTGATGAGGCAATCACGTTCTT
CAGGGCCAATGTGTTCTTTAGAAACTTTGATATTAAGAGCTCGGCTGATA
AGCTGCTAATATATTTGACATTCTACATAAATGTGGCTTTGAAAAGACTT
GAGGGTCGTAGAACTTTGGCTGAGGGAACCAAGGCAATCATTAACTTGGG
CTTGGA
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