CX293950

Overview
NameCX293950
Unique NameCX293950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length449
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293950 vs. ExPASy Swiss-Prot
Match: PATT5_SOLTU (Patatin-T5 OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.115e-11
Identity = 39/88 (44.32%), Postives = 54/88 (61.36%), Query Frame = 3
Query:    6 FQSCGIKDNYLLIQDDTLTGDATSVDIATDENMQRLVETGTKLLKEQVSRVNLETGLYDKVFGEVTNEEALAHFAKLLSEQLKLRCRQ 269
            FQ+   ++NYL +Q++ LTG  T +D A++ NMQ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  307 FQALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 383          
BLAST of CX293950 vs. ExPASy Swiss-Prot
Match: PAT17_SOLCD (Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.069e-11
Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 3
Query:    6 FQSCGIKDNYLLIQDDTLTGDATSVDIATDENMQRLVETGTKLLKEQVSRVNLETGLYDKVFGEVTNEEALAHFAKLLSEQLKLRCRQ 269
            FQ+   K+NYL +Q++ LTG  T +D A++ NM+ LV+ G  LLK+ VS  N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  307 FQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE-----------TYEEALKRFAKLLSDRKKLRANK 383          
BLAST of CX293950 vs. ExPASy Swiss-Prot
Match: PATD3_SOLTU (Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 3
Query:    3 LFQSCGIKDNYLLIQDDTLTGDATSVDIATDENMQRLVETGTKLLKEQVSRVNLETGLYDKVFGEVTNEEALAHFAKLLSEQLKLRCRQ 269
            +FQ+   + NYL +Q++ LTG  T +D A++ NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  307 VFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 384          
BLAST of CX293950 vs. ExPASy Swiss-Prot
Match: PATD2_SOLTU (Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 3
Query:    3 LFQSCGIKDNYLLIQDDTLTGDATSVDIATDENMQRLVETGTKLLKEQVSRVNLETGLYDKVFGEVTNEEALAHFAKLLSEQLKLRCRQ 269
            +FQ+   + NYL +Q++ LTG  T +D A++ NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  307 VFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 384          
BLAST of CX293950 vs. ExPASy Swiss-Prot
Match: PAT08_SOLTU (Patatin-08 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.064e-11
Identity = 38/89 (42.70%), Postives = 54/89 (60.67%), Query Frame = 3
Query:    3 LFQSCGIKDNYLLIQDDTLTGDATSVDIATDENMQRLVETGTKLLKEQVSRVNLETGLYDKVFGEVTNEEALAHFAKLLSEQLKLRCRQ 269
            +FQ+   + NYL +Q++ LTG  T +D A++ NM+ LV+ G  LLK+ VS+ N E           T EEAL  FAKLLS++ KLR  +
Sbjct:  307 VFQAQNSQKNYLRVQENALTGTTTEMDDASEANMESLVQVGENLLKKPVSKDNPE-----------TYEEALKRFAKLLSDRKKLRANK 384          
The following BLAST results are available for this feature:
BLAST of CX293950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PATT5_SOLTU3.115e-1144.32Patatin-T5 OS=Solanum tuberosum PE=1 SV=1[more]
PAT17_SOLCD4.069e-1144.32Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1[more]
PATD3_SOLTU9.064e-1142.70Patatin group D-3 OS=Solanum tuberosum PE=2 SV=1[more]
PATD2_SOLTU9.064e-1142.70Patatin group D-2 OS=Solanum tuberosum PE=2 SV=1[more]
PAT08_SOLTU9.064e-1142.70Patatin-08 OS=Solanum tuberosum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05004A02SK FlavRip1 Citrus clementina cDNA clone C05004A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293950 ID=CX293950; Name=CX293950; organism=Citrus clementina; type=EST; length=449bp
CTCTCTTTCAATCCTGCGGAATCAAAGACAACTACCTTCTAATTCAGGAC
GACACATTGACTGGGGATGCAACATCTGTTGACATTGCCACGGATGAGAA
TATGCAAAGGCTTGTGGAAACTGGAACCAAGTTGTTGAAAGAACAGGTGT
CAAGGGTGAACCTGGAAACTGGCCTATATGATAAGGTCTTCGGAGAGGTC
ACAAATGAAGAAGCACTTGCTCACTTTGCCAAATTACTCTCTGAACAACT
TAAGCTCCGCTGCCGCCAATAAGTCTTTTAATTTGAAACTCGTTTTATTT
GAGTAAGGCATAAGGATTCCGCATGCATGTTTTTATGTGTAATCAATCCG
ATACAAAGTGCTTCCAATTGGACTCTACGAATTAATAAGATTATTACTAT
TAAAATACAAATAAGATCTTCTTTTGAATTTATAGTTAAAAAAAAAAAA
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