CX293954

Overview
NameCX293954
Unique NameCX293954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length360
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9703 contig Ccv1_Contig9703:42..401. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.254e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++ V  MD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTVV--MDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.400e-19
Identity = 44/65 (67.69%), Postives = 49/65 (75.38%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTC 250
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.801e-19
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 2
Query:   65 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCGS 256
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+ +  +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVI-VAAEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.198e-16
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTC 250
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.669e-16
Identity = 38/66 (57.58%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV  +D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVF-VDAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.553e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.553e-16
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.565e-14
Identity = 33/66 (50.00%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     ++ +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CX293954 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.115e-13
Identity = 32/66 (48.48%), Postives = 42/66 (63.64%), Query Frame = 2
Query:   56 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVSMDVQAAEAEGNCKCGPTCACVNCTCG 253
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     ++ +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CX293954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.254e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE4.400e-1967.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC9.801e-1959.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV1.198e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.669e-1657.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ4.553e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI4.553e-1654.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ5.565e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI2.115e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionC05004A07SK FlavRip1 Citrus clementina cDNA clone C05004A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293954 ID=CX293954; Name=CX293954; organism=Citrus clementina; type=EST; length=360bp
CAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTTCTAAGCTCAA
TCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGACAGGAGCCAG
TGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCGAGACTGACTT
GAGCTTTGTCAGCACCGTTGTTAGTATGGACGTTCAGGCTGCTGAGGCTG
AAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGAACTGCACTTGT
GGTAGTCACTAATAAGCAAACACATGCAGCAAAAAATAAGAAGCTGCAAG
TGTGCCTAAATATTGTGGGGGCTAAGAATAATGTCAGGGTGATTAACAAA
AAAAAAAAAA
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