CX293955

Overview
NameCX293955
Unique NameCX293955
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length556
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX293955 vs. ExPASy Swiss-Prot
Match: IPT9_ARATH (tRNA isopentenyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.270e-36
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 2 
Query:  224 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCKQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYL 556
            +G+LSEA WLLD GLLPNSN ATRAIGYRQAMEYLL+C++  G SS  EFYAFL +FQ ASRNFAKRQ+TWFR E +YHWLNA++PL+++L  I  AY      + +P+ L
Sbjct:  298 NGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESL 408
The following BLAST results are available for this feature:
BLAST of CX293955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IPT9_ARATH6.270e-3663.96tRNA isopentenyltransferase 9 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionC05004A08SK FlavRip1 Citrus clementina cDNA clone C05004A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293955 ID=CX293955; Name=CX293955; organism=Citrus clementina; type=EST; length=556bp
GATAAATATAAGAGCAAAACACAAAAACCTAAAGCTAATACACGCGACCA
ACTGTTATTAAAAAAAAAAAACACACCCCCCCACAAAAAAACACCCACAA
CCGCTCAAAGCCTCACACCACACTCAGCCTCTCTCACCACAGCTGGCAGC
TGCTCACCCCACACACCAAGCCTCTCATACCACAGCTGGCAGATGCTAAC
AAAGCGGCTGACTGAGGATAGCTGATGGGATTTTGTCTGAGGCCGCATGG
CTTCTTGATGAAGGTCTTCTTCCTAATTCAAACTCTGCAACTCGAGCAAT
TGGTTATAGACAAGCTATGGAATACCTCTTAAGATGCAAACAGCAGGGGG
GTACAAGTTCTACAGGGGAATTTTATGCTTTTCTGGCAGAATTTCAAAAA
GCGTCAAGAAACTTTGCCAAAAGGCAACTGACATGGTTCCGTAATGAACG
TATATATCACTGGCTTAATGCTGCTAGACCGCTGGAAAATGTGCTCAATT
ACATCATTACTGCATATCATGATTCAACTGGAACTTTGGTTGTGCCTGAT
TATCTT
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