CX293957

Overview
NameCX293957
Unique NameCX293957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9261 contig Ccv1_Contig9261:5..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.412e-39
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 3
Query:  213 MASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            M+SD K+  F++V+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+ GKDATNDFEDVG
Sbjct:    1 MSSDRKVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVG 63          

HSP 2 Score: 69.707 bits (169), Expect = 4.412e-39
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            SD+AR+MMDKY+IG+ID S+VP  R Y+  +QPAYNQDKTPEF
Sbjct:   65 SDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEF 107          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.489e-39
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 3
Query:  213 MASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            MAS+ K+  F++V+ HNKTKDCWLIISGKVYDV+ FMDDHPGGDEVL+S+ GKDATNDFEDVG
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVG 63          

HSP 2 Score: 69.707 bits (169), Expect = 7.489e-39
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            SD+AR+MM+KYYIG+ID STVP  R Y+   QPAYNQDKTPEF
Sbjct:   65 SDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEF 107          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.434e-33
Identity = 42/63 (66.67%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  213 MASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            M  + K+    +V+ HN  KDCWL+ISGKVYDV+ F+DDHPGGDEVL+SA GKDAT+DFEDVG
Sbjct:    1 MGGETKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVG 63          

HSP 2 Score: 62.3882 bits (150), Expect = 2.434e-33
Identity = 27/43 (62.79%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S SAR M+D+YY+GDID +T+P K  Y P  QP YNQDKT EF
Sbjct:   65 SSSARAMLDEYYVGDIDSATIPTKTKYTPPNQPHYNQDKTSEF 107          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.547e-32
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            K++  ++VA HN   DCWLII GKVY+VS F++DHPGGD+VL+S+ GKDAT+DFEDVG
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVG 64          

HSP 2 Score: 67.0106 bits (162), Expect = 1.547e-32
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S +AR MMD+YY+GDID ST+P +  Y+P +QP YNQDKTPEF
Sbjct:   66 STTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEF 108          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.420e-32
Identity = 36/63 (57.14%), Postives = 51/63 (80.95%), Query Frame = 3
Query:  213 MASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            M  + KI    +V+ HN+  DCW++I+GKVY+V+ F++DHPGGD+VL+S+ GKDAT+DFEDVG
Sbjct:    1 MGDEAKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVG 63          

HSP 2 Score: 67.3958 bits (163), Expect = 3.420e-32
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S+SAREMM++YY+G+IDP+T+P+K  Y P +QP YNQDKT EF
Sbjct:   65 SESAREMMEQYYVGEIDPTTIPKKVKYTPPKQPHYNQDKTSEF 107          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.281e-31
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 3
Query:  213 MASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            M    K+    +V+ HN  KDCWLIISGKVY+V+ F++DHPGG EVL+SA GKDAT+DFED+G
Sbjct:    1 MGGQSKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIG 63          

HSP 2 Score: 63.1586 bits (152), Expect = 1.281e-31
Identity = 28/43 (65.12%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S SAR M+D+YY+GDID ST+P K  Y P +QP YNQDKT EF
Sbjct:   65 SSSARAMLDEYYVGDIDSSTIPTKVKYTPPKQPHYNQDKTTEF 107          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.342e-30
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            KI    +VA HN +KDCWLII+GKVYDV+ F++DHPGGD+VL+SA GKDAT+DFED+G
Sbjct:    3 KIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIG 60          

HSP 2 Score: 56.6102 bits (135), Expect = 2.342e-30
Identity = 24/43 (55.81%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S SA+ M+D+YY+GDID S++P +  Y P +QP YN DKT EF
Sbjct:   62 SSSAKAMLDEYYVGDIDSSSIPSQVKYTPPKQPLYNPDKTREF 104          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.240e-29
Identity = 33/58 (56.90%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  228 KIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            K++   +V+ H++  DCWL+I GKVYDV+ F+DDHPGG +VL+S+  KDAT+DFED+G
Sbjct:    5 KVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIG 62          

HSP 2 Score: 61.6178 bits (148), Expect = 7.240e-29
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRKRAYIPLEQPAYNQDKTPEF 531
            S SAR MMD+  +GDID ST+P K +Y P +QP YNQDKTP+F
Sbjct:   64 SSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQF 106          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.593e-16
Identity = 29/65 (44.62%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  207 EQMASDPKIHQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            +++ +    ++ ++VA  N  K+ WL+I G+VYDV+ F+++HPGG+EVL+  AG DA+  FEDVG
Sbjct:   14 QEVETSVTYYRMEEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVG 78          

HSP 2 Score: 31.187 bits (69), Expect = 4.593e-16
Identity = 13/19 (68.42%), Postives = 15/19 (78.95%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPS 459
            S  AREM+ +YYIGDI PS
Sbjct:   80 SSDAREMLKQYYIGDIHPS 98          
BLAST of CX293957 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.593e-16
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 3
Query:  219 SDPKI--HQFQQVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISAAGKDATNDFEDVG 401
            S+P +  ++ ++VA  N  ++ W++I G+VYD++ F+ +HPGG+EVL+  AG DAT  FEDVG
Sbjct:   16 SEPSVTYYRLEEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVG 78          

HSP 2 Score: 31.187 bits (69), Expect = 4.593e-16
Identity = 13/24 (54.17%), Postives = 17/24 (70.83%), Query Frame = 1
Query:  403 SDSAREMMDKYYIGDIDPSTVPRK 474
            S  AREM+ +YYIGD+ PS +  K
Sbjct:   80 SPDAREMLKQYYIGDVHPSDLKPK 103          
The following BLAST results are available for this feature:
BLAST of CX293957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
CYB51_ARATH4.412e-3977.78Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB7.489e-3977.78Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_TOBAC2.434e-3366.67Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5_ORYSJ1.547e-3265.52Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB52_ARATH3.420e-3257.14Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5S_TOBAC1.281e-3161.90Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB5_BOROF2.342e-3068.97Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_CUSRE7.240e-2956.90Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5B_PONAB4.593e-1644.62Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_MOUSE4.593e-1646.03Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05004A12SK FlavRip1 Citrus clementina cDNA clone C05004A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293957 ID=CX293957; Name=CX293957; organism=Citrus clementina; type=EST; length=590bp
TTCGGCACATCACAGAATTCCTCACTTTGTTTGATTTCAAAATCTACTTC
TTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTGATCA
AAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTACTTT
ATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAGCTGC
AGTAGTGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCCAACAGGT
CGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGCAAGG
TGTATGATGTGTCCTCATTCATGGATGATCACCCTGGAGGAGATGAGGTT
TTGATTTCTGCAGCTGGGAAAGATGCAACAAATGACTTTGAAGATGTGGG
TCAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGTGACATT
GATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACTGGAGCAACC
TGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTCTACAGA
TTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGTGGT
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