CX293962

Overview
NameCX293962
Unique NameCX293962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length505
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig103 contig Ccv1_Contig103:22..526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX293962 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.655e-34
Identity = 83/155 (53.55%), Postives = 104/155 (67.10%), Query Frame = 3 
Query:   45 VSMAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWEAIENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELA 500
            +S+AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKW+ +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSRKELA
Sbjct:    3 ISVAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELA 150
The following BLAST results are available for this feature:
BLAST of CX293962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH4.655e-3453.55Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC05004B05SK FlavRip1 Citrus clementina cDNA clone C05004B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293962 ID=CX293962; Name=CX293962; organism=Citrus clementina; type=EST; length=505bp
CAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCAAAAGTATCA
ATGGCAGCGACGGCGTACGCGGCGGTGTTAACTCCACGTGTCCCCTCAAC
CACCACCGTCAAAGTCAAATCTTCTCACTGCTTTGCTCTTCCCTGCCTCC
CTCCTCGTTCGTCAACGCCACCATTCTCTTCTTCCATTAAACAAGTTTCA
GAGTCGAGAAGGTTTCCTTTGCTTCAGGTTAGAGCCTCTTCCTCAGAAGA
GACATCCACAGTTGATGCAGATGAACTTTTTTCAGACTTGAAGGAAAAGT
GGGAGGCCATTGAAAACAAGTCCACGGTACTTCTCTATGGAGGTGGGGCA
ATAGTGGCTGTTTGGTTATCCTCAACTATTGTTGGTGCCATCAATTCAGT
GCCTTTGCTTCCCAAACTCTTGGAGTTGATTGGACTTGGTTATACTGGAT
GGTTTGTCTACAGATACCTTCTCTTCAAGTCAAGCAGAAAAGAACTAGCC
ACGGA
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