CX293967 | Citrus Genome Database

Overview


Name	CX293967
Unique Name	CX293967
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	500

Libraries


Library Name	Type
FlavRip1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig529	contig	Ccv1_Contig529:1..500.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_WHEAT (Photosystem II reaction center protein I OS=Triticum aestivum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_VITVI (Photosystem II reaction center protein I OS=Vitis vinifera GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_TOBAC (Photosystem II reaction center protein I OS=Nicotiana tabacum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SPIOL (Photosystem II reaction center protein I OS=Spinacia oleracea GN=psbI PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SOYBN (Photosystem II reaction center protein I OS=Glycine max GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SORBI (Photosystem II reaction center protein I OS=Sorghum bicolor GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SOLTU (Photosystem II reaction center protein I OS=Solanum tuberosum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SOLLC (Photosystem II reaction center protein I OS=Solanum lycopersicum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SOLBU (Photosystem II reaction center protein I OS=Solanum bulbocastanum GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

[Close]

BLAST of CX293967 vs. ExPASy Swiss-Prot
Match: PSBI_SINAL (Photosystem II reaction center protein I OS=Sinapis alba GN=psbI PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1

Query:  160 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 267
            MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE
Sbjct:    1 MLTLKLFVYTVVIFFVSLFIFGFLSNDPGRNPGREE 36

The following BLAST results are available for this feature:

BLAST of CX293967 vs. ExPASy Swiss-Prot

BLAST of CX293967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111


Match Name	E-value	Identity	Description
PSBI_WHEAT	1.172e-13	100.00	Photosystem II reaction center protein I OS=Tritic...	[more]
PSBI_VITVI	1.172e-13	100.00	Photosystem II reaction center protein I OS=Vitis ...	[more]
PSBI_TOBAC	1.172e-13	100.00	Photosystem II reaction center protein I OS=Nicoti...	[more]
PSBI_SPIOL	1.172e-13	100.00	Photosystem II reaction center protein I OS=Spinac...	[more]
PSBI_SOYBN	1.172e-13	100.00	Photosystem II reaction center protein I OS=Glycin...	[more]
PSBI_SORBI	1.172e-13	100.00	Photosystem II reaction center protein I OS=Sorghu...	[more]
PSBI_SOLTU	1.172e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLLC	1.172e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SOLBU	1.172e-13	100.00	Photosystem II reaction center protein I OS=Solanu...	[more]
PSBI_SINAL	1.172e-13	100.00	Photosystem II reaction center protein I OS=Sinapi...	[more]

Pages

Properties


Property Name	Value
Genbank description	C05004B11SK FlavRip1 Citrus clementina cDNA clone C05004B11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX293967 ID=CX293967; Name=CX293967; organism=Citrus clementina; type=EST; length=500bp
AATTGTGTGAATTTAATTTATGAAAACGATTTTCTATTTAGAGAATCAAA
TTCTAAAAAGAACTTCATTTCTTGATGTCAAAATTGGATATGTAGTATAA
AAATAGAGAATCTATTCTCTTTTTCCTTTTCCCCAAAAACCTGATTTGGA
GATTGTGTAATGCTTACTCTCAAACTCTTTGTTTACACCGTAGTGATATT
CTTTGTTTCGCTCTTCATCTTCGGATTCCTGTCTAATGATCCAGGGCGTA
ATCCCGGACGCGAAGAATAAAAAAGGAAGGAGTTGCTTACTTTATTCGTA
TAAACGTTCTTAGGATTTTTTGATTCCCAGTTACTATTAAAAATAAAGTA
AAAGTGTTCGCTAAAGGTAAATTTGAAAAATACCAAGCCATCGCCCGAAA
CGGAAAGAGAGGGATTCGAACCCTCGGTACGAATAACTCGTACACCGGAT
TAGCAATCCGACGCTTTAATCCACTCAGCCATCTCTCCTAATTGAAATAA