CX293970

Overview
NameCX293970
Unique NameCX293970
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293970 vs. ExPASy Swiss-Prot
Match: PHS_PELLD (Putative pterin-4-alpha-carbinolamine dehydratase OS=Pelodictyon luteolum (strain DSM 273) GN=Plut_0106 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 33/93 (35.48%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  304 DLTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEIWTHAV 582
            +L   KCV C ++ L P+AE  ++ L+ ++  W +V+E+G+ +L R+   ++F + +     V ++AE+E HHP L +  W  V++E WTHAV
Sbjct:    3 ELNKTKCVSC-SEGLPPLAERESEELLKEIPEWVIVSEDGVSRLVRTFTFENFREAMAFAGSVGELAESEQHHPKL-VTEWGKVRVEWWTHAV 93          
BLAST of CX293970 vs. ExPASy Swiss-Prot
Match: PHS_CHLTE (Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobium tepidum GN=CT0342 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 1
Query:  307 LTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEIWTHAV 582
            L  K CVPC+     PMA +  +  +  +  W LV+++G  KL R    K F   L+    V  +AEAEGHHP L L  W  V +  WTHA+
Sbjct:    4 LENKHCVPCEGT-AAPMASEELQRQLSSLPEWTLVDDSGTSKLVRVFTFKDFQSALDFTNRVGQLAEAEGHHPAL-LTEWGKVTVSWWTHAI 93          
BLAST of CX293970 vs. ExPASy Swiss-Prot
Match: PHS_CHLP8 (Putative pterin-4-alpha-carbinolamine dehydratase OS=Chlorobaculum parvum (strain NCIB 8327) GN=Cpar_1693 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 34/92 (36.96%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  307 LTTKKCVPCDTKDLRPMAEDSAKHLMPKVVGWDLVNENGILKLNRSLKVKSFTKGLELFKLVADVAEAEGHHPDLHLVGWNNVQIEIWTHAV 582
            L  K CVPC+  +  PMA +  +  +  +  W++V+++G  KL R    K F   L+    V  +AE+EGHHP L L  W  V +  WTHA+
Sbjct:    4 LEKKHCVPCEGTEA-PMAPEELQRQLSHIPDWNVVDDSGTPKLVRVFTFKDFNDALDFTVRVGQLAESEGHHPAL-LTEWGKVTVSWWTHAI 93          
The following BLAST results are available for this feature:
BLAST of CX293970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PHS_PELLD1.550e-1135.48Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
PHS_CHLTE1.550e-1139.13Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
PHS_CHLP84.511e-1136.96Putative pterin-4-alpha-carbinolamine dehydratase ... [more]
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Properties
Property NameValue
Genbank descriptionC05004C02SK FlavRip1 Citrus clementina cDNA clone C05004C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293970 ID=CX293970; Name=CX293970; organism=Citrus clementina; type=EST; length=583bp
CTGCAGGCATTCGGCACGAGGATTCGGCGGAGAAAGCAATAACTAGCCAG
TGAGCAGACACGTTCGTGCCGTGACGCCAACTTCGTAAGCAATTATCTAC
ATATTGATCCAATGAACCGGTTGTTTCATCCTCATCTCCTTTCTCTCTCT
AGGCCTCAGGTACCTCTACGATCAGTATTTGAAAGCCTGTTTGCTCGTAA
TGGACGCTCCAATATTCGAGTGACTGAGATATTTCAGAATCGTGTGGGAT
TGTTTCTATCTAGGAACTCACTGTATGGGTTTAGAACCTTTTGCACTGGC
CAAGATTTGACGACTAAAAAGTGTGTGCCATGCGACACAAAGGACTTACG
TCCCATGGCCGAAGATAGTGCTAAGCACTTAATGCCCAAGGTGGTAGGGT
GGGATTTGGTGAATGAAAATGGTATCTTGAAGCTGAACCGATCCTTGAAA
GTGAAGAGTTTCACCAAAGGTTTGGAGTTATTTAAGCTTGTAGCAGATGT
TGCTGAAGCAGAAGGTCATCATCCAGACCTTCATCTTGTTGGATGGAACA
ATGTACAAATTGAGATATGGACGCATGCAGTTG
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