CX293984

Overview
NameCX293984
Unique NameCX293984
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length353
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 8.302e-42
Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F  G REGPLCDE IRNVKFKI+DA IA EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA
Sbjct:  766 IVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F  G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA
Sbjct:  766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F  G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA
Sbjct:  765 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 872          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F  G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA
Sbjct:  766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3
Query:   30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            + + F  G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA
Sbjct:  766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.321e-34
Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F  G REGPLCDE IRNV F+++D  +APE ++RG GQIIPTARRV YS+FL A+PRLMEPVY VE+  P D +  IY +L+ RRGHV  D+P+PG+P Y+V+A
Sbjct:  783 FQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRA 886          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.038e-27
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F    REGP+ +EP+R+++F I+D  +  + +HRG GQIIPTARRV Y+A L+A P L+EPV+ VEIQ P   +  +Y VL+ RRGHV  +  +PGTP + +KA
Sbjct:  668 FQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKA 771          

HSP 2 Score: 24.2534 bits (51), Expect = 8.038e-27
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            LN +KDS+V GFQ
Sbjct:  657 LNEIKDSVVSGFQ 669          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_BOVIN (Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 7.092e-25
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F    +EG LC+E +R V+F + D  +  + +HRG GQIIPTARR  Y++ L A PRLMEP+Y VEIQ P   V  IY VL+ +RGHV  +    GTP ++VKA
Sbjct:  683 FQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEETQVAGTPMFVVKA 786          

HSP 2 Score: 23.8682 bits (50), Expect = 7.092e-25
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            LN +KDS+V GFQ
Sbjct:  672 LNEIKDSVVAGFQ 684          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.093e-25
Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F   ++EG L +E +R + F++ D  +  + +HRG GQIIPTARRV Y++ L A PRL+EPVY VEIQ P + +  IY+VL+ +RGHV  ++ +PGTP Y +KA
Sbjct:  668 FQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKA 771          

HSP 2 Score: 23.8682 bits (50), Expect = 7.093e-25
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            LN +KDS+V GFQ
Sbjct:  657 LNEIKDSVVAGFQ 669          
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4)

HSP 1 Score: 108.997 bits (271), Expect = 9.230e-25
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 3
Query:   42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353
            F    REG L DE +R V+F + D  +  + +HRG GQIIPTARRV Y++ L A PRL+EPVY VEIQ P   V  IY VL+ RRGHV  +    GTP ++VKA
Sbjct:  677 FQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKA 780          

HSP 2 Score: 23.8682 bits (50), Expect = 9.230e-25
Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2
Query:    8 LNAVKDSIVQGFQ 46
            LN +KDS+V GFQ
Sbjct:  666 LNEIKDSVVAGFQ 678          
The following BLAST results are available for this feature:
BLAST of CX293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
U5S1_CHICK8.302e-4274.07116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_PONAB1.084e-4173.15116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.084e-4173.15116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.084e-4173.15116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.084e-4173.15116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO8.321e-3461.54114 kDa U5 small nuclear ribonucleoprotein compone... [more]
EF2_NEUCR8.038e-2750.00Elongation factor 2 OS=Neurospora crassa GN=cot-3 ... [more]
EF2_BOVIN7.092e-2550.00Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=... [more]
EF2_BETVU7.093e-2549.04Elongation factor 2 OS=Beta vulgaris PE=2 SV=1[more]
EF2_CAEEL9.230e-2552.88Elongation factor 2 OS=Caenorhabditis elegans GN=e... [more]

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Properties
Property NameValue
Genbank descriptionC05004D08SK FlavRip1 Citrus clementina cDNA clone C05004D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293984 ID=CX293984; Name=CX293984; organism=Citrus clementina; type=EST; length=353bp
GAGCTTGCTGAATGCTGTTAAGGATTCCATTGTTCAAGGATTTCAGTAGG
GGCGCTCGAGAAGGACCCCTCTGTGATGAACCTATCAGAAATGTCAAGTT
TAAAATAGTCGATGCAAGGATTGCACCTGAACCGCTGCATCGAGGATCTG
GACAGATCATTCCCACAGCTCGACGTGTGGCTTATTCAGCTTTTCTTATG
GCTACCCCTCGGCTTATGGAACCGGTGTATTATGTTGAGATACAAACTCC
AATTGATTGTGTCTCTGCAATCTACACGGTGTTATCTACAAGGCGTGGAC
ATGTCACTGCCGATGTTCCTCAGCCAGGAACTCCAGCTTATATTGTTAAG
GCA
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