CX293984
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 8.302e-42 Identity = 80/108 (74.07%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 + + F G REGPLCDE IRNVKFKI+DA IA EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA Sbjct: 766 IVQGFQWGTREGPLCDELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41 Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 + + F G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA Sbjct: 766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41 Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 + + F G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA Sbjct: 765 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 872
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41 Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 + + F G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA Sbjct: 766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 1.084e-41 Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 3 Query: 30 LFKDFSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 + + F G REGPLCDE IRNVKFKI+DA +A EPLHRG GQIIPTARRV YSAFLMATPRLMEP Y+VE+Q P DCVSA+YTVL+ RRGHVT D P PG+P Y +KA Sbjct: 766 IVQGFQWGTREGPLCDELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKA 873
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 8.321e-34 Identity = 64/104 (61.54%), Postives = 81/104 (77.88%), Query Frame = 3 Query: 42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 F G REGPLCDE IRNV F+++D +APE ++RG GQIIPTARRV YS+FL A+PRLMEPVY VE+ P D + IY +L+ RRGHV D+P+PG+P Y+V+A Sbjct: 783 FQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRA 886
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_NEUCR (Elongation factor 2 OS=Neurospora crassa GN=cot-3 PE=3 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 8.038e-27 Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 3 Query: 42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 F REGP+ +EP+R+++F I+D + + +HRG GQIIPTARRV Y+A L+A P L+EPV+ VEIQ P + +Y VL+ RRGHV + +PGTP + +KA Sbjct: 668 FQWATREGPIGEEPMRSIRFNILDVTLHADAIHRGGGQIIPTARRVLYAATLLAEPSLLEPVFLVEIQVPEQAMGGVYGVLTRRRGHVFGEEQRPGTPLFTIKA 771 HSP 2 Score: 24.2534 bits (51), Expect = 8.038e-27 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 8 LNAVKDSIVQGFQ 46 LN +KDS+V GFQ Sbjct: 657 LNEIKDSVVSGFQ 669
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_BOVIN (Elongation factor 2 OS=Bos taurus GN=EEF2 PE=2 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 7.092e-25 Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 F +EG LC+E +R V+F + D + + +HRG GQIIPTARR Y++ L A PRLMEP+Y VEIQ P V IY VL+ +RGHV + GTP ++VKA Sbjct: 683 FQWATKEGALCEENMRGVRFDVHDVTLHADAIHRGGGQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEETQVAGTPMFVVKA 786 HSP 2 Score: 23.8682 bits (50), Expect = 7.092e-25 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 8 LNAVKDSIVQGFQ 46 LN +KDS+V GFQ Sbjct: 672 LNEIKDSVVAGFQ 684
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_BETVU (Elongation factor 2 OS=Beta vulgaris PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 7.093e-25 Identity = 51/104 (49.04%), Postives = 73/104 (70.19%), Query Frame = 3 Query: 42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 F ++EG L +E +R + F++ D + + +HRG GQIIPTARRV Y++ L A PRL+EPVY VEIQ P + + IY+VL+ +RGHV ++ +PGTP Y +KA Sbjct: 668 FQWASKEGALAEENMRGICFEVCDVVLHTDAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKA 771 HSP 2 Score: 23.8682 bits (50), Expect = 7.093e-25 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 8 LNAVKDSIVQGFQ 46 LN +KDS+V GFQ Sbjct: 657 LNEIKDSVVAGFQ 669
BLAST of CX293984 vs. ExPASy Swiss-Prot
Match: EF2_CAEEL (Elongation factor 2 OS=Caenorhabditis elegans GN=eft-2 PE=2 SV=4) HSP 1 Score: 108.997 bits (271), Expect = 9.230e-25 Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 3 Query: 42 FSRGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQIIPTARRVAYSAFLMATPRLMEPVYYVEIQTPIDCVSAIYTVLSTRRGHVTADVPQPGTPAYIVKA 353 F REG L DE +R V+F + D + + +HRG GQIIPTARRV Y++ L A PRL+EPVY VEIQ P V IY VL+ RRGHV + GTP ++VKA Sbjct: 677 FQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKA 780 HSP 2 Score: 23.8682 bits (50), Expect = 9.230e-25 Identity = 9/13 (69.23%), Postives = 11/13 (84.62%), Query Frame = 2 Query: 8 LNAVKDSIVQGFQ 46 LN +KDS+V GFQ Sbjct: 666 LNEIKDSVVAGFQ 678 The following BLAST results are available for this feature:
BLAST of CX293984 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CX293984 ID=CX293984; Name=CX293984; organism=Citrus clementina; type=EST; length=353bpback to top |