CX293997

Overview
NameCX293997
Unique NameCX293997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10960 contig Ccv1_Contig10960:206..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.047e-42
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   84 AAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFGGK 494
            A+     +FI++SC  TTYPA+C QSLSAYA +IQ +P++LA TAL VSL+R Q A++F+ +L KF+ LK R+Y AI DCL+E+ D++DR+S+S  E+ ++  AKG DF + MSNVETWVSAALTDE TC DGF GK
Sbjct:   20 ASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGK 156          

HSP 2 Score: 26.5646 bits (57), Expect = 1.047e-42
Identity = 11/16 (68.75%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  491 QGLGGKVKSSVRAQVV 538
            +G+ GK+K SVRAQVV
Sbjct:  156 KGMDGKIKESVRAQVV 171          
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  111 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGF 485
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKK--SLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.836e-14
Identity = 42/127 (33.07%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  111 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSF--VTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGF 485
            ++SSC ST YP LC  +++A   + ++   Q  V  +S++++      ++  + KL K  NL  RE  A+ DCL+ + +T+D L K+V++L      K      H  +++T +SAA+T++ TC DGF
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKK--SLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 3
Query:  111 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKLRKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGFG 488
            +++ C +T YP+ C  S+S+   S    P  L   +L V++    S   F +KLR       R  +AI  C    GD +DRL+ S+  L  +           +SNVETW+SAALTD++TC D  G
Sbjct:   77 LKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSS---FPSKLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSA--SVSNVETWLSAALTDQDTCLDAVG 197          
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.091e-11
Identity = 39/126 (30.95%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  111 IRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGF 485
            +RSSC ST YP LC+ ++         S + +   +++++++  +     V KL +K + L  RE  A+ DCL+ + +T+D L ++V++L H+   K +    H  +++T +S+A+T++ TC DGF
Sbjct:   59 LRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDL-HLYPTK-KTLREHAGDLKTLISSAITNQETCLDGF 182          
BLAST of CX293997 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 39/137 (28.47%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   78 VTAAGIADTRFIRSSCKSTTYPALCVQSLSAYAPSIQQSPRQLAVTALSVSLSRAQSAKSFVTKL-RKFRNLKHREYEAIADCLDEMGDTVDRLSKSVQELNHMGQAKGQDFLWHMSNVETWVSAALTDENTCTDGF 485
            +T         ++S C ST YP LC  +++A       S +++   +L+++    +     V KL  K + L  RE  A+ DCL+ + +T+D L  +V++L+     K +    H  +++T +S+A+T++ TC DGF
Sbjct:   51 ITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQ--YPKQKSLRKHADDLKTLISSAITNQGTCLDGF 185          
The following BLAST results are available for this feature:
BLAST of CX293997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
21KD_DAUCA1.047e-4257.6621 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI6.836e-1433.07Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI6.836e-1433.07Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_PHAVU3.751e-1234.92Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME3_ARATH1.091e-1130.95Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME2_ARATH3.175e-1128.47Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
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Properties
Property NameValue
Genbank descriptionC05004F01SK FlavRip1 Citrus clementina cDNA clone C05004F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX293997 ID=CX293997; Name=CX293997; organism=Citrus clementina; type=EST; length=562bp
TTTAATTAGTTTCTGAAAACATGGCAAAAACAGGCTGTCTTTTGCTATTG
CTCTCTCTCCTCTACATTATAAGCTTGGTCACAGCTGCCGGGATTGCTGA
CACAAGATTTATCAGAAGTTCTTGCAAATCCACAACTTATCCAGCGCTGT
GCGTGCAGTCTCTCTCAGCTTATGCCCCATCAATTCAACAAAGCCCCCGG
CAACTGGCTGTCACAGCCTTGTCCGTGAGCCTCTCCAGGGCCCAATCCGC
AAAGTCATTCGTGACCAAGCTGAGGAAGTTCAGGAACCTGAAGCACAGAG
AGTATGAGGCGATTGCCGACTGCTTGGATGAGATGGGTGACACTGTGGAC
CGGCTCAGCAAGTCGGTTCAGGAGCTGAACCACATGGGTCAGGCCAAGGG
TCAGGACTTTCTGTGGCACATGAGCAACGTTGAGACATGGGTTAGTGCTG
CTTTGACTGATGAGAACACTTGTACTGATGGGTTCGGTGGCAAGGCCTTG
GAGGGAAGGTTAAGTCCTCTGTTAGGGCTCAGGTTGTTATGTTGCTCATG
TACTAGCATGCC
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