CX294017

Overview
NameCX294017
Unique NameCX294017
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig306 contig Ccv1_Contig306:542..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294017 vs. ExPASy Swiss-Prot
Match: PSB5_SPIOL (Proteasome subunit beta type-5 OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.810e-12
Identity = 29/39 (74.36%), Postives = 35/39 (89.74%), Query Frame = 3
Query:   24 VGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAEVAGA 140
            VGP+GWKK++GDDVG+LH+ YYPV P+TVEQEM EV GA
Sbjct:  234 VGPDGWKKVTGDDVGDLHFQYYPVVPATVEQEMVEVVGA 272          
BLAST of CX294017 vs. ExPASy Swiss-Prot
Match: PSB5A_ARATH (Proteasome subunit beta type-5-A OS=Arabidopsis thaliana GN=PBE1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.458e-11
Identity = 28/35 (80.00%), Postives = 29/35 (82.86%), Query Frame = 3
Query:   24 VGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMAE 128
            VGP GW KLSGDDVGELHYHYYPV P+T EQ M E
Sbjct:  236 VGPEGWTKLSGDDVGELHYHYYPVAPATAEQVMEE 270          
The following BLAST results are available for this feature:
BLAST of CX294017 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PSB5_SPIOL1.810e-1274.36Proteasome subunit beta type-5 OS=Spinacia olerace... [more]
PSB5A_ARATH4.458e-1180.00Proteasome subunit beta type-5-A OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC05004H04SK FlavRip1 Citrus clementina cDNA clone C05004H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294017 ID=CX294017; Name=CX294017; organism=Citrus clementina; type=EST; length=378bp
CTCGTGCCGAATTCGGCACGAGGGTGGGACCAAATGGATGGAAGAAGCTG
TCTGGTGATGATGTTGGAGAGCTTCACTACCATTATTATCCAGTCACGCC
CAGTACGGTGGAGCAAGAAATGGCTGAAGTCGCAGGGGCATAATTGAGTC
TTGCTCAATTTGGACCAGGTTTGAGATATTCCTCATATTCACAGATCCAG
TGGAGGACTTTACGGATTTGCTTCTGAACTTTGTCAATGTACCTTGGGTT
GATCCCGGCGATGACTTGTGAATTCAACCTAGTTAAGTTGATGCTTTAAG
AACCCTGCATTTTCTTTTGGTATTTTCATTATGACAAGTACGGTTCTATT
AAGCATTTTGTTATAGTAATTTAGTTGC
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