CX294020

Overview
NameCX294020
Unique NameCX294020
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig532 contig Ccv1_Contig532:1..559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294020 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.201e-26
Identity = 60/125 (48.00%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:  166 KEAWRKYLIQLQVHPLRTKAITAGVLAGCSDAIAQKISGVXXXXXXXXXXXXXFDFGYGVPFGHFLNKFLDAIFKG-RDNKSVAKKVLLEQLIFSPWINFLFMTYFGLVVEGXPWGSVMKKVRRT 537
            K   ++YL QLQ HPLRTKAITAGVL+G SD ++QK+SG+             F  G+  P GHF + +LD  FKG +D ++VAKKV+LEQL  SP  + LFM Y+G+V+E  PW  V +++++T
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQKIQLRRVLLKVIFAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKT 132
The following BLAST results are available for this feature:
BLAST of CX294020 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PMP22_ARATH1.201e-2648.00Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC05004H07SK FlavRip1 Citrus clementina cDNA clone C05004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294020 ID=CX294020; Name=CX294020; organism=Citrus clementina; type=EST; length=558bp
AATTCGCACGAGGGATCAAACCAAGTGAAACCAGCTTGTCATTTCCTTAA
CTCAATTTCTTTATCATCGCATTGTGGTGACTCCTCTCTTAACATTGAGC
TTTTGGAGAGAAGTTATTGTTGATCATCACAGGCTTCACAACCGCCAGCC
ATGTCTAATATAGTCAAAGAAGCTTGGAGAAAATATCTTATACAACTCCA
AGTTCACCCTTTGAGAACCAAGGCAATCACAGCTGGGGTACTAGCTGGGT
GTAGTGATGCAATTGCCCAGAAGATTTCTGGGGTCAAAAAGCTTCAACTG
AAAAGATTGCTGCTTCTTATGCTTTTTGATTTCGGATATGGAGTACCATT
TGGGCATTTTCTTAACAAGTTCTTGGATGCCATTTTCAAGGGAAGGGACA
ACAAATCTGTTGCAAAGAAGGTATTATTGGAGCAACTAATATTTTCGCCT
TGGATCAACTTTCTGTTCATGACTTACTTTGGCTTGGTGGTTGAAGGANA
ACCATGGGGTTCAGTCATGAAGAAAGTTCGAAGGACTATCCAGCTGTTCA
GTTTACTT
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