CX294023

Overview
NameCX294023
Unique NameCX294023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX294023 vs. ExPASy Swiss-Prot
Match: DRP2B_ARATH (Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 49/84 (58.33%), Postives = 59/84 (70.24%), Query Frame = 2 
Query:    2 GAESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRR-TPNRVXXXXXXTQSGSKY 247
            G ESSPRT+  +SG+DW +AF+AAA+GP SL+ Y    S GHSRRYSDPA+NG+  SGS   SRR TPNR+       QSGS Y
Sbjct:  840 GTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRYG---SGGHSRRYSDPAQNGEDSSGSGGSSRRTTPNRL--PPAPPQSGSSY 918
[Close]
BLAST of CX294023 vs. ExPASy Swiss-Prot
Match: DRP2A_ARATH (Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:    2 GAESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNSGSRRTPNRVXXXXXXTQSGSKY 247
            G ESSPR S  +SGDDW +AF++AANGP    S S+  S GHSRRYSDPA+NGD  S GS S  R TPNR+      T S  +Y
Sbjct:  833 GTESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGSNRRTTPNRLPPAPPPTGSAYRY 914
The following BLAST results are available for this feature:
BLAST of CX294023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DRP2B_ARATH1.225e-1658.33Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 S... [more]
DRP2A_ARATH2.729e-1655.95Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 S... [more]
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Properties
Property NameValue
Genbank descriptionC05004H11SK FlavRip1 Citrus clementina cDNA clone C05004H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294023 ID=CX294023; Name=CX294023; organism=Citrus clementina; type=EST; length=517bp
TGGAGCAGAAAGCAGCCCTAGAACAAGTGCCGCATCAGGTGATGACTGGA
GATCCGCTTTTGATGCTGCTGCCAATGGACCTGTAAGCCTTCGCAGCTAC
TCTCGGTCTGCATCCAATGGTCACAGCCGGCGTTACAGTGATCCAGCCGA
GAATGGTGATGTGAGATCTGGTTCAAACTCGGGCAGTCGTCGTACTCCTA
ATCGGGTGCCGCCGCCTCCGCCACCAACACAGTCAGGCTCCAAGTACTTT
TAGGTGGCTTACAGATTTTGGTTGACAATTCATATTTTCTCTGCATATTT
TTAGTGAGTGAAGGCCTGCTTAACCACTCATGATTCCAGTAGTTGGTTAA
TCACTTCTTTAGAATCTTCAAAAGAGGGTGCTTTGTGTAAATAGGACTCT
ATAGTTCCTGAGCTGAAAGTCAGGATTTTACGGCTTGCCCCTTGTCAGAA
CTATGAATTCAAAGTGTATTTGAATTCCATTTATCATATTCTTCTATTCA
TTATTTAAAAAAAAAAA
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