CX294027

Overview
NameCX294027
Unique NameCX294027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294027_ssr514 microsatellite CX294027_ssr514:514..527. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig533 contig Ccv1_Contig533:1..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: ARG7_PHAAU (Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  224 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 421
            LD PKG+  VYVGEN  R++IP++ L +P FQ LL QAEEEFG+DH M GLTIPC E +FQ +TS L
Sbjct:   23 LDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89          
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.968e-18
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 2
Query:  227 DVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 421
            D PKG+  VYVGE   R++IP+++L +P FQ LL QAEEEFG+DH M GLTIPC E VFQ +TS L
Sbjct:   16 DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81          
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: AXX15_SOYBN (Auxin-induced protein X15 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 39/67 (58.21%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  224 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 421
            +D PKG+  VYVGE   R++IP++++ +P FQ LL QAEEEFG+DH M GLTIPC E+VFQ +T  L
Sbjct:   15 VDAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCL 81          
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  224 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 421
            ++VPKG+ VVYVG+   R++IP+++L +P FQ LL QAEEEFG+DH M GLTIPC+E  F ++TS L
Sbjct:   23 VEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89          
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: AX6B_SOYBN (Auxin-induced protein 6B OS=Glycine max PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.927e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 2
Query:  224 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDH-DMGLTIPCEEQVFQSLTSML 421
            +DV KG+  VYVGE   R++IP+++L +P FQ LL QAEEEFG+ H + GLTIPC E VFQ +TS L
Sbjct:   23 VDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFL 89          
BLAST of CX294027 vs. ExPASy Swiss-Prot
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  224 LDVPKGHFVVYVGENRSRYIIPITFLTRPEFQSLLQQAEEEFGFDHDM-GLTIPCEEQVFQSLTSML 421
            +DVPKG+  VYVG+   R+ IP+++L  P FQ LL QAEEEFG+DH M GLTIPC+E+ F ++T+ L
Sbjct:   24 VDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90          
The following BLAST results are available for this feature:
BLAST of CX294027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ARG7_PHAAU5.335e-1862.69Indole-3-acetic acid-induced protein ARG7 OS=Phase... [more]
AX15A_SOYBN6.968e-1862.12Auxin-induced protein 15A OS=Glycine max PE=2 SV=1[more]
AXX15_SOYBN2.027e-1758.21Auxin-induced protein X15 OS=Glycine max PE=2 SV=1[more]
AX10A_SOYBN1.314e-1658.21Auxin-induced protein X10A OS=Glycine max PE=2 SV=... [more]
AX6B_SOYBN2.927e-1658.21Auxin-induced protein 6B OS=Glycine max PE=2 SV=1[more]
A10A5_SOYBN8.518e-1656.72Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC05005A04SK FlavRip1 Citrus clementina cDNA clone C05005A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294027 ID=CX294027; Name=CX294027; organism=Citrus clementina; type=EST; length=601bp
CTCGTGCCGAATTCGGCACGAGGAATAATTGAAAAAAAGAAGAAGAAAGA
AACTTCTCTCAGAGCTCTTCTTCTCTAGTGCCATTAATTACCCGCACAAG
TTCTTCATTAGGATGGCCATCAGAAAATCAAACAAGTTGTCTCAAACGGC
TGTGATTAAGCAAATTCTCAAGAGATGCTCGAGCTTGGGGAAGAAACAAA
GCTACGATGAACAAGGACTCCCTTTAGATGTCCCAAAAGGTCATTTTGTT
GTGTATGTTGGTGAAAACAGAAGCAGATACATCATCCCAATAACTTTCTT
GACTCGTCCTGAGTTTCAAAGCCTGCTTCAACAAGCCGAAGAAGAATTTG
GCTTTGATCATGACATGGGCTTAACCATTCCCTGTGAAGAACAAGTGTTC
CAGTCCTTAACATCAATGCTCAGATAAGAAGAATATTGCCGAGCTACGCT
GCTAGGGTACTTGCTTGTTTGTTTTTGGAGAAATTGGCTGATGATGAAGC
TGCTTCAATTGCTTCTCTCTCTCTCTCTTTTTTTCCTTTTTTCTTTTTCT
TTTCAGTAAATCTAACCCGGCCACGAAGAATAATATTTAACCATGGATAT
A
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