CX294028

Overview
NameCX294028
Unique NameCX294028
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294028_ssr435 microsatellite CX294028_ssr435:435..446. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2562 contig Ccv1_Contig2562:253..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.316e-27
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCSRGQ 383
            +SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPY+I PSTDCS+ Q
Sbjct:   57 KSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

HSP 2 Score: 56.6102 bits (135), Expect = 2.316e-27
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:   89 APVTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            AP T A++CGQV++SLAPCI +LT GG   PP CC+GVK
Sbjct:   20 APYTEALSCGQVSSSLAPCISYLTKGGAV-PPACCSGVK 57
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.486e-26
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            R++N  ARTTPDRQAACNCLKQ   ++ G+ PN AA LP +CGV IPY+I PST+C+
Sbjct:   58 RNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCA 114

HSP 2 Score: 53.5286 bits (127), Expect = 5.486e-26
Identity = 21/40 (52.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:   86 TAPVTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            + P+  AITCGQV+++LAPCIP++  GG   PP CC G++
Sbjct:   20 SVPIAQAITCGQVSSNLAPCIPYVRGGGAV-PPACCNGIR 58
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.886e-25
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PY+I  ST+C+
Sbjct:   56 RTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCA 112

HSP 2 Score: 51.6026 bits (122), Expect = 5.886e-25
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:   95 VTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            V +AITCGQVT+SLAPCI ++ +GG   PP CC G++
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAV-PPACCNGIR 56
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.735e-24
Identity = 38/56 (67.86%), Postives = 47/56 (83.93%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDC 371
            RSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PY+I PSTDC
Sbjct:   32 RSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDC 87

HSP 2 Score: 43.8986 bits (102), Expect = 1.735e-24
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 2 
Query:  107 ITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            ITCGQV++SLAPCI +L  GG   P  CC GV+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVR 32
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.860e-23
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            R++N  ARTTPDRQAACNCLKQ   ++ G+ PN AA LP +CGV IPY+I  ST+C+
Sbjct:   32 RNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCA 88

HSP 2 Score: 47.7506 bits (112), Expect = 1.860e-23
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 2 
Query:  107 ITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            ITCGQV+++LAPCIP++  GG   PP CC G++
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAV-PPACCNGIR 32
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.789e-23
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            +++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PY+I  ST+C+
Sbjct:   56 KTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCA 112

HSP 2 Score: 48.9062 bits (115), Expect = 8.789e-23
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:   95 VTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            V +AITC QV+A+LAPCI ++ +GG   PP CC G+K
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAV-PPACCNGIK 56
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.038e-23
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            R++N  ARTTPDR+ ACNCLKQ  G+I G+ PN AA LP +CGV IPY+I  ST+C+
Sbjct:   32 RNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCA 88

HSP 2 Score: 45.4394 bits (106), Expect = 9.038e-23
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 2 
Query:  107 ITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            ITCGQV++SLAPCI ++  GG   PP CC G++
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAV-PPACCNGIR 32
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.520e-22
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCS 374
            R++N  A+TT DRQ ACNCLKQ   ++ G+  N AA LP +CGV +PY+I PST+C+
Sbjct:   58 RNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCA 114

HSP 2 Score: 49.6766 bits (117), Expect = 2.520e-22
Identity = 19/40 (47.50%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:   86 TAPVTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            + P+  A+TCGQV+++LAPCI ++  GG   PP CC G++
Sbjct:   20 SVPIAQALTCGQVSSNLAPCIAYVRGGGAV-PPACCNGIR 58
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.525e-22
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCSRGQ 383
            ++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPY+I PSTDCS+ Q
Sbjct:   55 KALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 45.8246 bits (107), Expect = 2.525e-22
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 2 
Query:   89 APVTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            AP   AITCGQVT++LAPC+ +L   G  P   CC GVK
Sbjct:   19 APCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVK 55
[Close]
BLAST of CX294028 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.275e-22
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:  204 RSLNGAARTTPDRQAACNCLKQAYGTIRGIKPNVAAGLPSQCGVRIPYRIIPSTDCSRGQ 383
            ++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPY+I PSTDCS  Q
Sbjct:   55 KNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 49.6766 bits (117), Expect = 4.275e-22
Identity = 24/39 (61.54%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:   89 APVTNAITCGQVTASLAPCIPFLTTGGRFPPPPCCTGVK 205
            AP   A+TCGQVTA LAPC+P+L   GR P   CC GVK
Sbjct:   19 APHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVK 55
The following BLAST results are available for this feature:
BLAST of CX294028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
NLTP_HELAN2.316e-2763.33Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU5.486e-2663.16Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO5.886e-2561.40Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI1.735e-2467.86Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE1.860e-2361.40Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO8.789e-2354.39Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR9.038e-2361.40Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV2.520e-2254.39Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_TOBAC2.525e-2263.33Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_SOLLC4.275e-2258.33Non-specific lipid-transfer protein 1 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionC05005A05SK FlavRip1 Citrus clementina cDNA clone C05005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294028 ID=CX294028; Name=CX294028; organism=Citrus clementina; type=EST; length=529bp
AGCTATAACCAAGCAAAAGCCTCCGTGAAAAATCCTCATGGCTGCTCTTA
AGCTTGTTTGAGCTTTGCTTTTGTGCATTCTGGTGACTGCCCCGGTGACT
AATGCCATAACATGCGGGCAGGTGACAGCCTCCTTGGCTCCATGCATCCC
TTTCTTGACAACTGGAGGGCGTTTTCCTCCACCGCCATGCTGTACCGGCG
TCAAGGTCTCTCAACGGCGCCGCCAGAACCACCCCTGACCGCCAAGCTGC
ATGCAACTGCTTGAAACAAGCTTACGGAACAATCCGCGGCATCAAACCTA
ATGTTGCCGCTGGCCTTCCTAGTCAATGTGGAGTCAGAATTCCTTACAGG
ATCATCCCCAGCACCGACTGCTCTAGAGGTCAGGTGAACTTGAGTTTGAG
CTCTGTGACTTTCCAAGTGTGATTGACTGAGAAGAATAAATAAATAAAGA
ATATCTATGTTAATTTCTTTGTCCGAACGAGTCTCCACTTGTATGAGTTT
CACTCTCATGTCATGTTTGATATTTGCTT
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