CX294042

Overview
NameCX294042
Unique NameCX294042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length598
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294042_ssr571 microsatellite CX294042_ssr571:571..580. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9901 contig Ccv1_Contig9901:68..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYTI_VIGUN (Cysteine proteinase inhibitor OS=Vigna unguiculata PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 3
Query:   36 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 320
            MA +GG R+V    N+ EI +LARFAV+EHNKKQN+ L+F            GTLY ITLEA +GGQKK++EAKVWEKPW+ FKEL+EF  V  +
Sbjct:    1 MAALGGNRDVAGNQNSLEIDSLARFAVEEHNKKQNALLEFGRVVSAQQQVVSGTLYTITLEAKDGGQKKVYEAKVWEKPWLNFKELQEFKHVGDA 95          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT6_ARATH (Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 3
Query:   36 MATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSSTA 335
            MA VGGV +V A  N+ E+ +LARFAVDEHNKK+N+ L+F            GTL+ +TLE +E GQKKL+EAKVW KPW+ FKEL+EF P + + + T+
Sbjct:   34 MALVGGVGDVPANQNSGEVESLARFAVDEHNKKENALLEFARVVKAKEQVVAGTLHHLTLEILEAGQKKLYEAKVWVKPWLNFKELQEFKPASDAPAITS 133          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT3_ARATH (Cysteine proteinase inhibitor 3 OS=Arabidopsis thaliana GN=CYS3 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.915e-20
Identity = 49/95 (51.58%), Postives = 63/95 (66.32%), Query Frame = 3
Query:   18 RGTQKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEF 302
            + T+KTM  +GGV ++    N+ EI +LARFA+ EHNK+QN  L+F            GT+Y +TLEA EG Q K FEAKVW KPWM FK+L+EF
Sbjct:   27 KSTEKTMM-LGGVHDLRGNQNSGEIESLARFAIQEHNKQQNKILEFKKIVKAREQVVAGTMYHLTLEAKEGDQTKNFEAKVWVKPWMNFKQLQEF 120          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT1_ORYSJ (Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 51/92 (55.43%), Postives = 59/92 (64.13%), Query Frame = 3
Query:   45 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 320
            +GGV  V    N+  +V+LARFAV EHNKK NS L+F            GTLY  T+E  EG  KKL+EAKVWEKPWM FKEL+EF PV  S
Sbjct:   47 LGGVEPV-GNENDLHLVDLARFAVTEHNKKANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGDAKKLYEAKVWEKPWMDFKELQEFKPVDAS 137          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT1_MAIZE (Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.241e-19
Identity = 49/112 (43.75%), Postives = 67/112 (59.82%), Query Frame = 3
Query:   12 SARGTQKTMAT------VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSS 329
            S R TQK           GG+++V A  N+ ++  LARFAV+EHN+K N+ L F            GT+Y +T+E  +G  KKL+EAKVWEKPW  FK+L+EF PV +  S+
Sbjct:   24 STRSTQKESVADNAGMLAGGIKDVPANENDLQLQELARFAVNEHNQKANALLGFEKLVKAKTQVVAGTMYYLTIEVKDGEVKKLYEAKVWEKPWENFKQLQEFKPVEEGASA 135          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT12_ORYSJ (Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 3
Query:   45 VGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQSHSST 332
            +GG  +  + AN+ E   LARFAVDEHNK++N+ L+F            GTL+ +TLEA+E G+KK++EAKVW KPW+ FKEL+EF     + + T
Sbjct:   48 LGGAHDAPSAANSVETDALARFAVDEHNKRENALLEFVRVVEAKEQVVAGTLHHLTLEALEAGRKKVYEAKVWVKPWLDFKELQEFRNTGDATTFT 143          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYTA_HELAN (Cysteine proteinase inhibitor A OS=Helianthus annuus PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.811e-18
Identity = 45/75 (60.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   87 EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPV 311
            EI  LARFAVDEHNKKQN+ L+F            G +Y ITLEA  GG KK +EAKVW KPW  FKEL+EF PV
Sbjct:    3 EIDELARFAVDEHNKKQNALLEFGKVVNTKEQVVAGKMYYITLEATNGGVKKTYEAKVWVKPWENFKELQEFKPV 77          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT1_ARATH (Cysteine proteinase inhibitor 1 OS=Arabidopsis thaliana GN=CYS1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 39/93 (41.94%), Postives = 59/93 (63.44%), Query Frame = 3
Query:   27 QKTMATVGGVREVEATANNQEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFN 305
            Q+    VGGVR+++A AN+ ++ +LARFAVDEHNK +N  L++            GT++ +T+E  +G   K++EAKV EK W   K+L+ FN
Sbjct:    4 QQAGTIVGGVRDIDANANDLQVESLARFAVDEHNKNENLTLEYKRLLGAKTQVVAGTMHHLTVEVADGETNKVYEAKVLEKAWENLKQLESFN 96          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT1_HORVU (Cysteine proteinase inhibitor OS=Hordeum vulgare GN=ICY PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.738e-16
Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 3
Query:   45 VGGVREVEATANNQ-EIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVA 314
            +GGV++  A   N  E + LARFAV EHN K N+ L+F            G ++  T+E  EGG KKL+EAKVWEK W  FK+L+EF P A
Sbjct:   17 LGGVQDAPAGRENDLETIELARFAVAEHNAKANALLEFEKLVKVRQQVVAGCMHYFTIEVKEGGAKKLYEAKVWEKAWENFKQLQEFKPAA 107          
BLAST of CX294042 vs. ExPASy Swiss-Prot
Match: CYT7_ARATH (Cysteine proteinase inhibitor 7 OS=Arabidopsis thaliana GN=CYS7 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.049e-15
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   84 QEIVNLARFAVDEHNKKQNSNLQFXXXXXXXXXXXXGTLYDITLEAVEGGQKKLFEAKVWEKPWMQFKELKEFNPVAQS 320
            +EI ++A FAV EHN+++N+ L+             G LY +TLE +E G+KK++EAKVW KPWM FK+L+EF  +  S
Sbjct:   59 KEIDDIALFAVQEHNRRENAVLELARVLKATEQVVAGKLYRLTLEVIEAGEKKIYEAKVWVKPWMNFKQLQEFKNIIPS 137          
The following BLAST results are available for this feature:
BLAST of CX294042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CYTI_VIGUN6.360e-2456.84Cysteine proteinase inhibitor OS=Vigna unguiculata... [more]
CYT6_ARATH6.360e-2453.00Cysteine proteinase inhibitor 6 OS=Arabidopsis tha... [more]
CYT3_ARATH1.915e-2051.58Cysteine proteinase inhibitor 3 OS=Arabidopsis tha... [more]
CYT1_ORYSJ5.572e-2055.43Cysteine proteinase inhibitor 1 OS=Oryza sativa su... [more]
CYT1_MAIZE1.241e-1943.75Cystatin-1 OS=Zea mays GN=RAMDAZC7 PE=2 SV=1[more]
CYT12_ORYSJ2.117e-1946.88Cysteine proteinase inhibitor 12 OS=Oryza sativa s... [more]
CYTA_HELAN6.811e-1860.00Cysteine proteinase inhibitor A OS=Helianthus annu... [more]
CYT1_ARATH2.191e-1641.94Cysteine proteinase inhibitor 1 OS=Arabidopsis tha... [more]
CYT1_HORVU3.738e-1647.25Cysteine proteinase inhibitor OS=Hordeum vulgare G... [more]
CYT7_ARATH7.049e-1545.57Cysteine proteinase inhibitor 7 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC05005C02SK FlavRip1 Citrus clementina cDNA clone C05005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294042 ID=CX294042; Name=CX294042; organism=Citrus clementina; type=EST; length=598bp
CTCGTGCCGAATCGGCACGAGGTACGCAGAAAACAATGGCTACAGTAGGC
GGTGTTCGTGAGGTTGAAGCAACAGCCAACAATCAGGAGATCGTTAATCT
CGCACGCTTCGCTGTGGATGAGCATAACAAGAAGCAGAATTCAAATCTGC
AATTTGTAAAAGTTGTAAGTGCGAAGCAGCAAGTGGTTTCAGGGACTCTG
TACGACATCACCTTGGAGGCTGTTGAAGGAGGTCAGAAGAAACTTTTTGA
AGCTAAGGTCTGGGAGAAGCCTTGGATGCAATTCAAGGAGTTGAAAGAAT
TCAATCCTGTTGCTCAGTCTCACTCCTCAACCGCTTAGCTTGTGGTGACT
GAAGATGACATCTACGTGTAGCTTGCAATGGATCAAACAAAGAGACAGTA
TCAATAAGAATGGAGCTATAACCATGTTCAGAATATAAAAATAAATGTAA
CCGGATTTATGAGTTTGGTTCTTTAATCTTTTGCAAGTTATGTGTCGATT
ATTTATGGTAGTAGCTGCAACTCAGCGCAACTTTTATACTGTGTGAAAAT
AATTGAATGACCTTGGTCTGTATATATATACAGATTATCTCTTCTACT
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