CX294043

Overview
NameCX294043
Unique NameCX294043
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length474
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.705e-16
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            +YIEQYEKD SKTGRDSQEALAPLV+VALKLSKM+++TGRSAPTVIT
Sbjct:  537 VYIEQYEKDSSKTGRDSQEALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.227e-16
Identity = 41/47 (87.23%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKD SKTGR+SQEAL+PLV++ALKLSKME+FTGRSAPTVIT
Sbjct:  536 LYIEQYEKDASKTGRESQEALSPLVDLALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKDPSKTGRDSQ+ALAPLV VAL L KM++FTGRSAPTVIT
Sbjct:  536 LYIEQYEKDPSKTGRDSQDALAPLVAVALGLXKMQEFTGRSAPTVIT 582          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.481e-16
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKDPSK GR S EALAPLVE ALKLSKME+FTGRSAPTVIT
Sbjct:  536 LYIEQYEKDPSKIGRLSHEALAPLVEAALKLSKMEEFTGRSAPTVIT 582          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 41/47 (87.23%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKD SK GRDSQEALAPLVEVALKLSKM+++T RSAPTVIT
Sbjct:  537 LYIEQYEKDSSKIGRDSQEALAPLVEVALKLSKMQEYTSRSAPTVIT 583          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.464e-16
Identity = 39/47 (82.98%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            +YIEQYE+D SKTGRDSQ+ALAPLV+VALKLSKM+++TGRSAPTVIT
Sbjct:  537 VYIEQYERDSSKTGRDSQDALAPLVDVALKLSKMQEYTGRSAPTVIT 583          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.444e-15
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKD SKTGRDSQEAL PLV+VALKLSKM++F+GRS PTVIT
Sbjct:  537 LYIEQYEKDSSKTGRDSQEALKPLVDVALKLSKMQEFSGRSEPTVIT 583          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.463e-15
Identity = 39/47 (82.98%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            LYIEQYEKD SK GRDSQ+AL PLV+VALKLSKM++FTGRS+PTVIT
Sbjct:  539 LYIEQYEKDASKIGRDSQDALGPLVDVALKLSKMQEFTGRSSPTVIT 585          
BLAST of CX294043 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.644e-14
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 1
Query:    4 LYIEQYEKDPSKTGRDSQEALAPLVEVALKLSKMEQFTGRSAPTVIT 144
            +YIEQYEKD SKTGR+S +AL+PLV+VALKLSK+++ TGRSAPTVIT
Sbjct:  535 IYIEQYEKDSSKTGRESSDALSPLVDVALKLSKIQELTGRSAPTVIT 581          
The following BLAST results are available for this feature:
BLAST of CX294043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PGMC2_MAIZE1.705e-1687.23Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC1_ARATH2.227e-1687.23Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC_POPTN4.962e-1687.23Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGMC_PEA6.481e-1689.36Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGMC_SOLTU8.464e-1687.23Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGMC1_MAIZE8.464e-1682.98Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC_MESCR1.444e-1585.11Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC2_ARATH2.463e-1582.98Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC_BROIN4.644e-1476.60Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]
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Properties
Property NameValue
Genbank descriptionC05005C03SK FlavRip1 Citrus clementina cDNA clone C05005C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294043 ID=CX294043; Name=CX294043; organism=Citrus clementina; type=EST; length=474bp
GCTCTCTATATTGAGCAGTATGAGAAGGATCCTTCAAAAACTGGCAGAGA
TTCTCAGGAGGCGCTTGCTCCTCTTGTGGAGGTTGCTCTAAAGCTTTCTA
AAATGGAGCAGTTCACTGGCCGATCAGCGCCTACCGTCATTACATAAACA
CATAGTGCTGCTACACGTGAGCCATCCATGAGATGGAAAGTCCATTTTGG
CAATAAACGGGGTTTTGTCTTGATGATGTCAGGCATTATACAACTGAACT
GTCAGCTGAAACTTGCATACTCTGCCCTTGACCCAGTTACAAATGTTTTT
TTATGTTTGTCATTCTGCCTACTTTGACATAAACACGAGAGTATCTGGAA
CAAAGAGTATCTGCAGTTTAAAATTTTTGATGTTCAAAATAATTTGGATG
TTGTTAATTAACTAACAAACCATCTGTTTTGTCTAAAAAAAAAAAAAAAA
AAAAAACTCGGGGGGGGGCCGGGT
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