CX294046

Overview
NameCX294046
Unique NameCX294046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig534 contig Ccv1_Contig534:1..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB52_ARATH (Probable cytochrome b5 isoform 2 OS=Arabidopsis thaliana GN=At2g32720 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.049e-26
Identity = 54/127 (42.52%), Postives = 90/127 (70.87%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQP-------SDFALKLKNLTKEYWAAPVAVVGISV 479
            +K++T+ E + HN   DCWIV++ KVY+VT +L+DHPGGDDV+L++T KDATD+FED GHS+ ARE++E + +GE+D ++ +  +++ +  +QP       S+F +KL       +  P+A++G++V
Sbjct:    5 AKIFTLSEVSEHNQAHDCWIVINGKVYNVTKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSESAREMMEQYYVGEIDPTT-IPKKVKYTPPKQPHYNQDKTSEFIIKLLQ-----FLVPLAILGLAV 125          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_ORYSJ (Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 7.785e-26
Identity = 51/127 (40.16%), Postives = 89/127 (70.08%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSS------PLIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMV 485
            K+YT++E A HN+KDDCW+++  KVY+V+ +L+DHPGGDDV+L++T KDATD+FED GHS  AR +++ + +G++DTS+       + P+    ++ +  +F +K+       +  P+A++G++V +
Sbjct:    7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDTSTIPARTKYVPPKQPHYNQDKTPEFIIKILQ-----FLVPLAILGLAVAI 128          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_CUSRE (Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.265e-25
Identity = 53/130 (40.77%), Postives = 86/130 (66.15%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTS------SPLIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMVGF 491
            SK+Y++ E + H+  +DCW+V+  KVYDVT +LDDHPGG DV+L++TAKDATD+FED GHS  AR +++  C+G++D+S      S   P+  + ++ +   F +KL       +  P+ ++G++V + F
Sbjct:    4 SKVYSLAEVSEHSQPNDCWLVIGGKVYDVTKFLDDHPGGADVLLSSTAKDATDDFEDIGHSSSARAMMDEMCVGDIDSSTIPTKTSYTPPKQPLYNQDKTPQFIIKLLQ-----FLVPLIILGVAVGIRF 128          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_BOROF (Cytochrome b5 OS=Borago officinalis PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.864e-25
Identity = 46/95 (48.42%), Postives = 73/95 (76.84%), Query Frame = 3
Query:  117 LSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQP 401
            + K++T+ E A HN   DCW++++ KVYDVT +L+DHPGGDDV+L+AT KDATD+FED GHS  A+ +L+ + +G++D+SS +  +++ +  +QP
Sbjct:    1 MGKIFTLAEVAQHNNSKDCWLIINGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDIGHSSSAKAMLDEYYVGDIDSSS-IPSQVKYTPPKQP 94          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_TOBAC (Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.608e-25
Identity = 53/131 (40.46%), Postives = 85/131 (64.89%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQP-------SDFALKLKNLTKEYWAAPVAVVGISVMVGF 491
            +K++T+ E + HN   DCW+V+  KVYDVT +LDDHPGGD+V+L+AT KDATD+FED GHS  AR +L+ + +G++D S+ +  + + +   QP       S+F +KL       +  P+ ++G++  + F
Sbjct:    5 TKVFTLAEVSQHNNAKDCWLVISGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSARAMLDEYYVGDID-SATIPTKTKYTPPNQPHYNQDKTSEFVVKLLQ-----FLVPLIILGVAFGIRF 129          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5S_TOBAC (Cytochrome b5, seed isoform OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.243e-23
Identity = 51/131 (38.93%), Postives = 87/131 (66.41%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQP-------SDFALKLKNLTKEYWAAPVAVVGISVMVGF 491
            SK++T+ E ++HN   DCW+++  KVY+VT +L+DHPGG +V+L+AT KDATD+FED GHS  AR +L+ + +G++D SS +  +++ +  +QP       ++F +KL       +  P+ ++G++  V F
Sbjct:    5 SKVFTLAEVSNHNNAKDCWLIISGKVYNVTKFLEDHPGGGEVLLSATGKDATDDFEDIGHSSSARAMLDEYYVGDID-SSTIPTKVKYTPPKQPHYNQDKTTEFIVKLLQ-----FLVPLIILGVAFGVHF 129          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB51_ARATH (Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN=At5g53560 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.120e-23
Identity = 47/127 (37.01%), Postives = 85/127 (66.93%), Query Frame = 3
Query:  123 KLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSP------LIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMV 485
            K+ + +E + HN   DCW+++  KVYDVT ++DDHPGGD+V+L++T KDAT++FED GHS  AR++++ + IGE+D+SS       + P+    ++ +  +F +K+       +  P+ ++G++++V
Sbjct:    6 KVLSFEEVSKHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMDKYFIGEIDSSSVPATRTYVAPQQPAYNQDKTPEFIIKILQ-----FLVPILILGLALVV 127          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_BRAOB (Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.169e-23
Identity = 48/132 (36.36%), Postives = 85/132 (64.39%), Query Frame = 3
Query:  108 MPTLSKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSP------LIPELEISSKRQPSDFALKLKNLTKEYWAAPVAVVGISVMV 485
            M +  K+   +E + HN   DCW+++  KVYDVT ++DDHPGGD+V+L++T KDAT++FED GHS  AR+++E + IGE+D+S+       + P     ++ +  +F +K+       +  P+ ++G++++V
Sbjct:    1 MASEKKVLGFEEVSQHNKTKDCWLIISGKVYDVTPFMDDHPGGDEVLLSSTGKDATNDFEDVGHSDTARDMMEKYYIGEIDSSTVPATRTYVAPVQPAYNQDKTPEFMIKILQ-----FLVPILILGLALVV 127          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.541e-21
Identity = 40/80 (50.00%), Postives = 61/80 (76.25%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSS 359
            +K++++ E + H TK D W+V+HNKVYD+T ++ +HPGG++V++    KDAT+ FED GHS +ARE+LE + IG LD +S
Sbjct:    3 AKIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS 82          
BLAST of CX294046 vs. ExPASy Swiss-Prot
Match: CYB5_DROME (Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.286e-20
Identity = 47/125 (37.60%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  120 SKLYTMQEAAHHNTKDDCWIVVHNKVYDVTSYLDDHPGGDDVVLAATAKDATDEFEDAGHSKDARELLESFCIGELDTSSPLIPELEISSKRQPSDFALKLKNLTKE----YWAAPVAVVGISVM 482
            +K +T  E A HNT  D W+++HN +YDVT++L++HPGG++V++    KDAT+ FED GHS DAR++++ + IGEL        E E +S  Q S+     +  T+E     W  P+ +  ++ +
Sbjct:    6 TKTFTRAEVAKHNTNKDTWLLIHNNIYDVTAFLNEHPGGEEVLIEQAGKDATENFEDVGHSNDARDMMKKYKIGEL-------VESERTSVAQKSEPTWSTEQQTEESSVKSWLVPLVLCLVATL 123          
The following BLAST results are available for this feature:
BLAST of CX294046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CYB52_ARATH2.049e-2642.52Probable cytochrome b5 isoform 2 OS=Arabidopsis th... [more]
CYB5_ORYSJ7.785e-2640.16Cytochrome b5 OS=Oryza sativa subsp. japonica GN=O... [more]
CYB5_CUSRE2.265e-2540.77Cytochrome b5 OS=Cuscuta reflexa PE=2 SV=1[more]
CYB5_BOROF3.864e-2548.42Cytochrome b5 OS=Borago officinalis PE=2 SV=1[more]
CYB5_TOBAC8.608e-2540.46Cytochrome b5 OS=Nicotiana tabacum PE=2 SV=1[more]
CYB5S_TOBAC1.243e-2338.93Cytochrome b5, seed isoform OS=Nicotiana tabacum P... [more]
CYB51_ARATH2.120e-2337.01Cytochrome b5 isoform 1 OS=Arabidopsis thaliana GN... [more]
CYB5_BRAOB6.169e-2336.36Cytochrome b5 OS=Brassica oleracea var. botrytis G... [more]
CYB5_RHIST7.541e-2150.00Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_DROME1.286e-2037.60Cytochrome b5 OS=Drosophila melanogaster GN=Cyt-b5... [more]

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Properties
Property NameValue
Genbank descriptionC05005C09SK FlavRip1 Citrus clementina cDNA clone C05005C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294046 ID=CX294046; Name=CX294046; organism=Citrus clementina; type=EST; length=561bp
CCTGAGATGCCAAATCCCAATTCTTGAGCACAGGGTTGAAGGTGAGGATC
TCAGAAAAGCTTGTTGAGAGAGAGGGAGAGCGGCTGACCAAAAGCCCACC
AATAAAGATGCCGACTCTCTCAAAGCTCTACACGATGCAAGAAGCTGCTC
ACCACAACACCAAAGACGATTGCTGGATTGTCGTTCATAACAAGGTGTAT
GATGTCACTTCATATTTGGATGATCATCCTGGTGGAGATGATGTAGTTCT
TGCTGCAACGGCAAAAGATGCAACAGACGAATTTGAAGATGCTGGGCATA
GCAAAGATGCAAGGGAACTCCTGGAGAGCTTTTGTATCGGTGAGCTTGAC
ACTTCATCTCCATTGATCCCAGAACTTGAAATTTCGTCTAAAAGGCAACC
GTCAGATTTTGCACTAAAGCTCAAGAACTTGACAAAGGAATACTGGGCTG
CTCCTGTTGCTGTTGTTGGCATCTCCGTGATGGTTGGCTTCTTGTGCTTG
CGCAAGAAGTGAACCAACGCATCTCCATTAACTGTCTAGTATGCTGCATG
AATTTTGGATT
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