CX294050

Overview
NameCX294050
Unique NameCX294050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:516..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.056e-29
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 203
            RAKFKFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  154 RAKFKFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.344e-28
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   83 RAKFKFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.998e-28
Identity = 58/66 (87.88%), Postives = 62/66 (93.94%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 200
            RAKFKFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  154 RAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.680e-26
Identity = 51/64 (79.69%), Postives = 61/64 (95.31%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 194
            RAKFKFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  154 RAKFKFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.680e-26
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  154 RAKFKFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.422e-25
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  154 RAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.057e-25
Identity = 51/65 (78.46%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  154 RAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.053e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  154 RAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.053e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  154 RAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294050 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.803e-24
Identity = 52/65 (80.00%), Postives = 57/65 (87.69%), Query Frame = 3
Query:    3 RAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 197
            RAKFKFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  154 RAKFKFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
The following BLAST results are available for this feature:
BLAST of CX294050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL10_VITRI8.056e-2982.0960S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_TOBAC2.344e-2890.7760S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_SOLME3.998e-2887.8860S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_PINTA1.680e-2679.6960S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_EUPES1.680e-2684.6260S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH1.422e-2581.5460S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH7.057e-2578.4660S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ORYSJ2.053e-2480.0060S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI2.053e-2480.0060S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL10_MAIZE7.803e-2480.0060S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05005D02SK FlavRip1 Citrus clementina cDNA clone C05005D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294050 ID=CX294050; Name=CX294050; organism=Citrus clementina; type=EST; length=382bp
GCCGTGCTAAGTTCAAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGG
AAATGGGGATTTACCAAGTTCAGCCGTGCTGATTATCTGCGGTGGAAGTC
GGAGAACAGGATTGTCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTC
ATGGTCCTTTGGCTCAACGTCAACCTGGAAGAGCTTTCCTGGAAGCAACA
ACCTAAGATATTTACTGTCTCAAAATAGCAGAGCTGGGTCTACTGTCTAG
TTTATTATTTTCCATTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAA
GTTGAAGTGACATGTTTCTTTGGTTTAAAAAAAAAAAAAAAAAAACTCGG
GGGGGGGCCCGGTCCCCATTTCCCCCTATAGG
back to top