CX294051

Overview
NameCX294051
Unique NameCX294051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:655..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 148
            KFSR+DYL++KSENRIVPDGVNAKLLGCHG LA+RQPGRAFL A
Sbjct:  104 KFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 37/45 (82.22%), Postives = 43/45 (95.56%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHAT 151
            KFSR+DYL++KSENRIVPDGVNAKLLG HGPLA+RQPGRAFL ++
Sbjct:  175 KFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 33/44 (75.00%), Postives = 44/44 (100.00%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 148
            KF+R+DY+++KS+NRI+PDGVNAKLLGCHGPLA+RQPG+AF++A
Sbjct:  175 KFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINA 218          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.637e-13
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA 154
            K +R+DY R KSENRI+PDGVNAKLLGCHG LA+R+PGRAF+ A A
Sbjct:  175 KINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDAVA 220          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 30/42 (71.43%), Postives = 40/42 (95.24%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFL 142
            K++R+DYL++K+ENRIVPDGVN KLLGC GPL++R+PG+AFL
Sbjct:  175 KYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFL 216          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 148
            KFSR +Y+R KSE RI+PDGVNAKLLGCHG L++R PG+AFL A
Sbjct:  175 KFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 148
            KFSR +Y+R KSE RI+PDGVNAKLLGCHG L++R PG+AFL A
Sbjct:  175 KFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA 154
            KF+R+DY + + E RIVPDGVNAK L CHGPLA+RQPG AFL A A
Sbjct:  175 KFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSAGA 220          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 33/46 (71.74%), Postives = 37/46 (80.43%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHATA 154
            KFSR+DYL++KSE RIVPDGVNAKLL  HG L  R PG+AFL A A
Sbjct:  175 KFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDAVA 220          
BLAST of CX294051 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 2
Query:   17 KFSRSDYLRFKSENRIVPDGVNAKLLGCHGPLASRQPGRAFLHA 148
            KF+R+D+ + + E R+VPDGVNAK L CHGPLA+RQPG AFL A
Sbjct:  175 KFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
The following BLAST results are available for this feature:
BLAST of CX294051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL10_TOBAC4.603e-1686.3660S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_SOLME2.284e-1582.2260S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_VITRI3.896e-1575.0060S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_EUPES1.637e-1373.9160S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_PINTA1.386e-1271.4360S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL102_ORYSJ1.386e-1272.7360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.386e-1272.7360S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ARATH1.386e-1269.5760S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL10_MAIZE6.878e-1271.7460S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]
RL101_ARATH1.173e-1165.9160S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionC05005D03SK FlavRip1 Citrus clementina cDNA clone C05005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294051 ID=CX294051; Name=CX294051; organism=Citrus clementina; type=EST; length=378bp
AATTCGGCACGAGGCCAAGTTTAGCCGCAGTGATTATTTGAGGTTCAAGT
CAGAGAACCGTATTGTGCCCGATGGTGTTAATGCAAAGCTTCTTGGATGT
CATGGACCCTTGGCGAGTCGCCAACCAGGAAGAGCTTTCTTACATGCCAC
AGCTTAGGATTTGTCGCCTGAGCACAACTTTTTGAGAGAATTTTCCAATT
GTAGGCATTTAGTACTGTGTCAAGTACTTGGTGCAATGCTTATGTTATCT
TTATTCCAGTTTTTATCATACACTTGGATTTTTCACTTTTAAGTTTAAGC
TAAGATTTCTGGCAATTGTAGTTTCTTTTGAACAAGTTTGAGAATACTGA
CATTTTGAAATGTTTTGTGCACATTACC
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