CX294052

Overview
NameCX294052
Unique NameCX294052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length366
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig118 contig Ccv1_Contig118:530..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEATT 189
            KFP RQKIIVSRKWGFTKF+R DY++WKS+NRI+PDGVNAKLLGCHGPLA RQPG+AF+ A T
Sbjct:  158 KFPARQKIIVSRKWGFTKFNRTDYIKWKSQNRILPDGVNAKLLGCHGPLANRQPGKAFINACT 220          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.798e-26
Identity = 55/61 (90.16%), Postives = 57/61 (93.44%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFP RQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLGCHG LA RQPGRAFLEA
Sbjct:   87 KFPRRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEA 147          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.185e-26
Identity = 54/62 (87.10%), Postives = 58/62 (93.55%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEAT 186
            KFPGRQKIIVSRKWGFTKFSR DYL++KSENRIVPDGVNAKLLG HGPLA RQPGRAFL ++
Sbjct:  158 KFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGNHGPLAARQPGRAFLSSS 219          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_PINTA (60S ribosomal protein L10 OS=Pinus taeda GN=RPL10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 47/60 (78.33%), Postives = 57/60 (95.00%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLE 180
            KFPGR+KIIV+RKWGFTK++RADYL+WK+ENRIVPDGVN KLLGC GPL+ R+PG+AFL+
Sbjct:  158 KFPGREKIIVNRKWGFTKYTRADYLKWKTENRIVPDGVNPKLLGCRGPLSNRKPGQAFLK 217          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.439e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFPGRQKIIVSRKWGFTK +RADY R KSENRI+PDGVNAKLLGCHG LA R+PGRAF++A
Sbjct:  158 KFPGRQKIIVSRKWGFTKINRADYPRLKSENRILPDGVNAKLLGCHGRLANRKPGRAFIDA 218          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.911e-23
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFPGRQKIIVSRKWGFTKF+RADY + + E RIVPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  158 KFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNAKFLSCHGPLANRQPGSAFLSA 218          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.445e-22
Identity = 47/61 (77.05%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFPGRQKIIVSRKWGFTKF+RAD+ + + E R+VPDGVNAK L CHGPLA RQPG AFL A
Sbjct:  158 KFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNAKFLSCHGPLANRQPGSAFLPA 218          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.203e-22
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  158 KFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.203e-22
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFPGRQKII SRKWGFTKFSR +Y+R KSE RI+PDGVNAKLLGCHG L+ R PG+AFL A
Sbjct:  158 KFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDGVNAKLLGCHGRLSARAPGKAFLSA 218          
BLAST of CX294052 vs. ExPASy Swiss-Prot
Match: RL10_MAIZE (60S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.597e-21
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = 1
Query:    1 KFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPGRAFLEA 183
            KFP RQKII SRKWGFTKFSRADYL++KSE RIVPDGVNAKLL  HG L +R PG+AFL+A
Sbjct:  158 KFPARQKIIESRKWGFTKFSRADYLKYKSEGRIVPDGVNAKLLANHGRLEKRAPGKAFLDA 218          
The following BLAST results are available for this feature:
BLAST of CX294052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL10_VITRI1.649e-2680.9560S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL10_TOBAC4.798e-2690.1660S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]
RL10_SOLME8.185e-2687.1060S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_PINTA3.439e-2478.3360S ribosomal protein L10 OS=Pinus taeda GN=RPL10 ... [more]
RL10_EUPES3.439e-2483.6160S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL102_ARATH2.911e-2380.3360S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL101_ARATH1.445e-2277.0560S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ORYSJ4.203e-2278.6960S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI4.203e-2278.6960S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL10_MAIZE1.597e-2178.6960S ribosomal protein L10 OS=Zea mays GN=RPL10 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC05005D04SK FlavRip1 Citrus clementina cDNA clone C05005D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294052 ID=CX294052; Name=CX294052; organism=Citrus clementina; type=EST; length=366bp
AAGTTTCCTGGTCGTCAAAAGATTATTGTCAGCAGGAAATGGGGATTTAC
CAAGTTCAGCCGTGCTGATTATCTGCGGTGGAAGTCGGAGAACAGGATTG
TCCCAGATGGTGTGAATGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCT
CAACGTCAACCTGGAAGAGCTTTCCTGGAAGCAACAACCTAAGATATTTA
CTGTCTCAAAATAGCAGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCA
TTTCGTACCTTTTCTCAGTTGAACTGGATTTCTCAAGTTGAAGTGACATG
TTTCTTTGGTTTAAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGTC
CCCATTTCCCCCTATA
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