CX294063

Overview
NameCX294063
Unique NameCX294063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig927 contig Ccv1_Contig927:52..590. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATO_YEAST (V-type proton ATPase subunit c'' OS=Saccharomyces cerevisiae GN=PPA1 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.085e-42
Identity = 84/163 (51.53%), Postives = 118/163 (72.39%), Query Frame = 1
Query:   49 GESSSWSRALVNISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            G   ++ + L+  SPY ++ +GIA+ +G+SV+GAAWGI+ITGSS+IGA ++APRIT+KNLIS+IFCE              +KL    A  +Y+  +L  GY++F +GI VG +NL+CG+ VGI G++ A+SDA +S+LFVKILVIEIFGS L L G+IVG+L
Sbjct:   42 GSDINFGKFLLRTSPYMWANLGIALCVGLSVVGAAWGIFITGSSMIGAGVRAPRITTKNLISIIFCEVVAIYGLIIAIVFSSKLTVATAENMYSKSNLYTGYSLFWAGITVGASNLICGIAVGITGATAAISDAADSALFVKILVIEIFGSILGLLGLIVGLL 204          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATO_SCHPO (Probable V-type proton ATPase 20 kDa proteolipid subunit OS=Schizosaccharomyces pombe GN=vma16 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 7.036e-42
Identity = 81/163 (49.69%), Postives = 110/163 (67.48%), Query Frame = 1
Query:   49 GESSSWSRALVNISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            GES  +   L++ SPYT+  +GIA  +   ++GAAWGI+I G+S++G A+KAPRI +KNLIS+IFCE               K+  +  +  Y       G+A+F  GI VG  NL+CG+CVGI GSS AL+DAQ++SLFVK+LV+EIFGS L LFG+IVG+L
Sbjct:   28 GESFDFGSFLLDTSPYTWGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGITGSSAALADAQDASLFVKVLVVEIFGSVLGLFGLIVGLL 190          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATO_MOUSE (V-type proton ATPase 21 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0b PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.956e-41
Identity = 84/156 (53.85%), Postives = 110/156 (70.51%), Query Frame = 1
Query:   76 LVNISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYA--PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            L   SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+S+IFCE            +    E   A++  A    +  AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+ LFGVIV IL
Sbjct:   41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATEPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAIL 196          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATO_HUMAN (V-type proton ATPase 21 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.016e-40
Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 1
Query:   76 LVNISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYA--PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            L   SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+S+IFCE            +    E   A+   A    +  AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+ LFGVIV IL
Sbjct:   41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAIL 196          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATO_BOVIN (V-type proton ATPase 21 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0B PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.016e-40
Identity = 84/156 (53.85%), Postives = 109/156 (69.87%), Query Frame = 1
Query:   76 LVNISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYA--PESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            L   SP+ +S +GI +AI +SV+GAAWGIYITGSS+IG  +KAPRI +KNL+S+IFCE            +    E   A+   A    +  AGY++F +G+ VG +NL CG+CVGI+GS  AL+DAQN SLFVKIL++EIFGSA+ LFGVIV IL
Sbjct:   41 LTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGGVKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGSGAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAIL 196          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.106e-14
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            F  +G A A+  S +GAA+G   +G  +    +  P +  K+++ V+               + T +   P ++   P  L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGI+
Sbjct:   14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKAK---PYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_TOBAC (V-type proton ATPase 16 kDa proteolipid subunit OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            F  +G A A+  S +GAA+G   +G  +    +  P +  K+++ V+               + T +   P ++ Y    L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGI+
Sbjct:   14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKTKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            F  +G A A+  S +GAA+G   +G  +    +  P +  K+++ V+               + T +   P ++ Y    L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGI+
Sbjct:   13 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKTKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            F  +G A A+  S +GAA+G   +G  +    +  P +  K+++ V+               + T +   P ++ Y    L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGI+
Sbjct:   13 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 153          
BLAST of CX294063 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 45/146 (30.82%), Postives = 75/146 (51.37%), Query Frame = 1
Query:  100 FSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEXXXXXXXXXXXXLQTKLESVPASQIYAPESLRAGYAIFASGIIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALELFGVIVGIL 537
            F  +G A A+  S +GAA+G   +G  +    +  P +  K+++ V+               + T +   P ++ Y    L  GYA  +SG+  G A L  G+ +GI+G +   ++AQ   LFV +++I IF  AL L+G+IVGI+
Sbjct:   14 FGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PKAKSYY---LFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGII 154          
The following BLAST results are available for this feature:
BLAST of CX294063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
VATO_YEAST1.085e-4251.53V-type proton ATPase subunit c'' OS=Saccharomyces ... [more]
VATO_SCHPO7.036e-4249.69Probable V-type proton ATPase 20 kDa proteolipid s... [more]
VATO_MOUSE5.956e-4153.85V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_HUMAN1.016e-4053.85V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATO_BOVIN1.016e-4053.85V-type proton ATPase 21 kDa proteolipid subunit OS... [more]
VATL_AVESA8.106e-1430.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TOBAC1.383e-1330.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC1.383e-1330.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_PHAAU1.383e-1330.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR1.383e-1330.82V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionC05005E07SK FlavRip1 Citrus clementina cDNA clone C05005E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294063 ID=CX294063; Name=CX294063; organism=Citrus clementina; type=EST; length=539bp
AAAAAAAAGAAGAAAAAATTGAAAAAAATGTCGGGCTCCGTAATGTTGGG
AGAATCAAGCTCATGGTCACGCGCGCTCGTTAATATATCACCATATACCT
TCTCCGCCATCGGCATCGCTGTCGCTATCGGCGTCTCCGTCCTCGGCGCC
GCCTGGGGGATCTACATAACGGGGAGTAGTTTAATCGGTGCCGCAATCAA
GGCTCCTCGTATCACCTCCAAGAATCTCATCAGTGTAATTTTTTGTGAAG
CTGTTGCTATATATGGGGTCATTGTTGCAATTATTTTACAAACAAAGCTA
GAAAGTGTTCCGGCATCACAGATATATGCACCAGAATCACTAAGAGCTGG
ATATGCCATCTTTGCCTCTGGGATCATCGTGGGCTTTGCTAACCTAGTTT
GTGGGTTGTGTGTAGGAATAATTGGAAGCAGCTGTGCATTGTCTGATGCC
CAAAACTCGTCCTTGTTTGTGAAGATTTTGGTGATTGAGATCTTTGGTAG
TGCTCTTGAGTTGTTTGGAGTGATTGTTGGAATATTATG
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