CX294073

Overview
NameCX294073
Unique NameCX294073
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig462 contig Ccv1_Contig462:35..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294073 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.221e-48
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 2
Query:  134 MARSLFKAKLLLAPVADGISLSISRRGYAAASPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 424
            MARSLFKAKLLLAPVADGISLSISRRGYAAA+PLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:    1 MARSLFKAKLLLAPVADGISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of CX294073 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.603e-22
Identity = 58/104 (55.77%), Postives = 71/104 (68.27%), Query Frame = 2
Query:  134 MARSLFKAKLLLAPVADGISLSISRRGYAAASPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 421
            MARS+   KLL A + DG+ +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:    1 MARSVSSFKLLGASIFDGLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of CX294073 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  134 MARSLFKAKLLLAPVADGISLSISRRGYAAASPLG---TISRTGIMEKNDLRPAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 421
            MARS+   K L A V D + +SISRRGY+ A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:    1 MARSVSSFKFLGASVFDALYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of CX294073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI2.221e-4898.97Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI1.603e-2255.77Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI1.149e-2052.88Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionC05005F08SK FlavRip1 Citrus clementina cDNA clone C05005F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294073 ID=CX294073; Name=CX294073; organism=Citrus clementina; type=EST; length=601bp
AAGAGAGCGAGCCGCTAACTTTTGCCTATAGCTACTGCAGGAGCAGAATC
TTTCTTCTTCTGTAGTAGCACTGTACAGAAACATCCCAGCTAGCTATCTT
CATATCTATTAAGTTCTATAAGTAAATAAAACAATGGCCCGCTCTCTCTT
CAAAGCTAAGCTTCTTCTTGCTCCTGTTGCTGATGGCATCTCGCTCTCCA
TTAGCAGGAGAGGATATGCTGCAGCATCACCCTTGGGGACCATATCTCGG
ACTGGTATCATGGAGAAAAATGATTTGAGGCCTGCGGTGAGAGAGGATTC
TGGGGCCTCTTCTGCCTGGGCCCCAGATCCCATCACTGGGTACTACAGGC
CGGAGAATCGGGCGGTCGAGATTGATCCAGCAGAGCTTCGAGAGATGCTG
TTGAACCACAAAGTCAGGGCACACTAGGGAGTGGTGGCGCATAGCAGCAG
ATCCTTTGCTGTTAGCGGTGCTTTAACTTTTTAAGTGATGTTGTTACAGT
AGCAATTTTGACTCACTCTTAAGTCTTTGCTGTTGTATTGATATCACTGT
TATTGACACTTTTATAGTGCATTGCATGATTTGTCTATAACTGTCATAAA
G
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