CX294080

Overview
NameCX294080
Unique NameCX294080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10799 contig Ccv1_Contig10799:14..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 2.148e-70
Identity = 126/170 (74.12%), Postives = 145/170 (85.29%), Query Frame = 3
Query:   48 AASDRTVLQF----GPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            A S+ T+LQF      +SA TS +TA++HPLVIFN+ DC+VRRPD AERVIGTLLGS+LPDGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQ+I
Sbjct:    3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEI 172          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  114 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQF 536
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  114 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQF 536
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 9.426e-34
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 3
Query:  114 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQF 536
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   93 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 232          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.231e-33
Identity = 67/141 (47.52%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  114 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQF 536
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDTG ++G  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.823e-32
Identity = 68/148 (45.95%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D Y RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVNP E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAYERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.353e-31
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   +    F  I
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-DKGVVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLSAARMGIKAYVCVSLGVPGGKTGCMFTPI 155          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.379e-31
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   +    F  I
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-EKGIVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAYVCVSLGVPGGKTGCMFTPI 155          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPI 151          
BLAST of CX294080 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.274e-30
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  102 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQKI 545
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  I
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPI 151          
The following BLAST results are available for this feature:
BLAST of CX294080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
EIF3F_ARATH2.148e-7074.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR9.426e-3447.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA9.426e-3447.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN9.426e-3447.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE1.231e-3347.52Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN8.823e-3245.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE3.353e-3145.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CULQU4.379e-3145.95Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS1.274e-3043.92Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE1.274e-3043.92Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC05005G04SK FlavRip1 Citrus clementina cDNA clone C05005G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294080 ID=CX294080; Name=CX294080; organism=Citrus clementina; type=EST; length=619bp
CCTCTTTGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGATAAGAATGGCG
GCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAGCGGTGACGTC
GAATATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAACATCTCCGACT
GTTACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGGCACGCTTCTT
GGCTCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACTCCTACGTCGT
TCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATTGAATACCATC
ATACCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGAAGTGATTGTT
GGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTGCCTTGATCCA
TGAATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTGACTGTAGATA
CAGGATTCAGAAATGGAGAGGGTACTGTAAAAGCTTATGTTTCTGTCAAT
TTGTCTCTTGGAGATCGACAGCTTGCTGCACAATTTCAGAAAATCCTCTT
GATCTTCGATGATTGAAGCTGAGCGAGTTGGATTCATATCTGAGTCACAT
CGGTGACAACTCCTAGTGA
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