CX294081

Overview
NameCX294081
Unique NameCX294081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
FlavRip1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3310 contig Ccv1_Contig3310:20..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.086e-79
Identity = 140/154 (90.91%), Postives = 151/154 (98.05%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRK+G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC ++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.086e-79
Identity = 141/154 (91.56%), Postives = 150/154 (97.40%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEH F+SKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MGEEQICAL+
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.724e-79
Identity = 139/154 (90.26%), Postives = 152/154 (98.70%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKT+PQQAGTIRKNGYIVIK+RPCKV+EVSTSKTGKHGHAKCHFVGIDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MGEE+IC+L+
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 2.724e-79
Identity = 140/154 (90.91%), Postives = 150/154 (97.40%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRK G+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC ++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.035e-78
Identity = 140/154 (90.91%), Postives = 148/154 (96.10%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+K GF EGKDLVL+VMS+MGEEQICA++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.035e-78
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC ++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.035e-78
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC ++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.352e-78
Identity = 138/154 (89.61%), Postives = 151/154 (98.05%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+  ADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MGEEQICAL+
Sbjct:    1 MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 3.012e-78
Identity = 139/154 (90.26%), Postives = 148/154 (96.10%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL Q+K GF EGKDLVL+VMS+MGEEQICA++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVK 154
[Close]
BLAST of CX294081 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 8.764e-78
Identity = 139/154 (90.26%), Postives = 149/154 (96.75%), Query Frame = 3 
Query:   63 MSDEEHHFKSKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALR 524
            MSDEEHHF+SKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTDE+LL Q+KDGF EGKDLV++VMS+MGEEQI A++
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIK 154
The following BLAST results are available for this feature:
BLAST of CX294081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
IF5A5_SOLTU2.086e-7990.91Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A2_NICPL2.086e-7991.56Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A_MANES2.724e-7990.26Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A1_SOLLC2.724e-7990.91Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A4_SOLLC1.035e-7890.91Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_TOBAC1.035e-7890.26Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL1.035e-7890.26Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A2_MEDSA1.352e-7889.61Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_SOLTU3.012e-7890.26Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A3_SOLTU8.764e-7890.26Eukaryotic translation initiation factor 5A-3 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05005G06SK FlavRip1 Citrus clementina cDNA clone C05005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294081 ID=CX294081; Name=CX294081; organism=Citrus clementina; type=EST; length=560bp
GAGCTATCTCAAAATCTCGCTCAGTAAATCGGCCGAGTCGGAATCAGTCA
GTGCTTAAAGCGATGTCGGACGAGGAGCATCACTTCAAGTCAAAGGCCGA
TGCCGGAGCCTCCAAGACTTACCCACAGCAAGCTGGTACCATCCGTAAGA
ACGGCTACATCGTCATCAAAAGCCGTCCCTGCAAGGTTGTGGAAGTCTCC
ACCTCCAAGACTGGAAAGCACGGTCATGCTAAGTGCCACTTTGTTGGAAT
TGATATCTTCAGTGGAAAGAAGCTGGAAGATATTGTCCCCTCTTCTCATA
ACTGTGATGTTCCCCATGTCAACCGTACCGACTATCAGTTGATTGATATT
TCTGAGGATGGATTTGTGAGTTTGCTGACTGAAAATGGGAACACCAAGGA
TGATCTGAGGCTCCCAACCGATGAGACTCTGCTGACCCAGCTCAAGGACG
GTTTTGCTGAGGGGAAGGACTTGGTTTTGACTGTCATGTCTTCAATGGGC
GAGGAGCAGATCTGTGCCCTCAGGATATTGGCCCAAGTCGTAGTTGCGCG
AATGTGATTA
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