CX294094

Overview
NameCX294094
Unique NameCX294094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294094 vs. ExPASy Swiss-Prot
Match: PREP2_ARATH (Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 4.345e-56
Identity = 104/151 (68.87%), Postives = 119/151 (78.81%), Query Frame = 1
Query:    1 NVWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKKRANLFE 453
            N WLWDRVRVSGGAYGG CDFDSHSGVFSFLSYRDPNLLKTLDIYDGT DFLR L++D+DTLTKAIIGTIGDVD+YQLPDAKGY+SLLRHLL +T          ILSTSLKDFKEFA+ ++++ D+G              N++R+N FE
Sbjct:  924 NTWLWDRVRVSGGAYGGSCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTGDFLRGLDVDEDTLTKAIIGTIGDVDSYQLPDAKGYTSLLRHLLNVTDEERQIRREEILSTSLKDFKEFAEAIDSVSDKGVAVAVASQEDIDAANRERSNFFE 1074          
BLAST of CX294094 vs. ExPASy Swiss-Prot
Match: PREP1_ARATH (Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 5.675e-56
Identity = 103/151 (68.21%), Postives = 118/151 (78.15%), Query Frame = 1
Query:    1 NVWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLEAIKDRGXXXXXXXXXXXXXXNKKRANLFE 453
            N WLWDRVRVSGGAYGGFCDFDSHSGVFS+LSYRDPNLLKTLDIYDGT DFLR L++D +TLTKAIIGTIGDVD+YQLPDAKGYSSLLRHLLG+T          IL+TSLKDFK+FA  ++ ++D+G              N +R+N FE
Sbjct:  925 NTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDAKGYSSLLRHLLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAANNERSNFFE 1075          
BLAST of CX294094 vs. ExPASy Swiss-Prot
Match: HYPA_CLOPE (Protein hypA OS=Clostridium perfringens GN=hypA PE=4 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.166e-14
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    7 WLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITXXXXXXXXXXILSTSLKDFKEFADVLE 366
            +LW+ VRV GGAYG F +F    G +  +SYRDPN+  TL+ YD    +L + E D+  +TK IIGTI   D       KG  ++  +L   T          I++  ++  K FA +++
Sbjct:  823 YLWNAVRVKGGAYGVFSNFRRDGGAY-IVSYRDPNIKSTLEAYDNIPKYLNDFEADEREMTKYIIGTIRKYDQPISNGIKGDIAVSYYLSNFTYEDLQKEREEIINADVEKIKSFAPMIK 941          
The following BLAST results are available for this feature:
BLAST of CX294094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PREP2_ARATH4.345e-5668.87Presequence protease 2, chloroplastic/mitochondria... [more]
PREP1_ARATH5.675e-5668.21Presequence protease 1, chloroplastic/mitochondria... [more]
HYPA_CLOPE9.166e-1435.00Protein hypA OS=Clostridium perfringens GN=hypA PE... [more]
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Properties
Property NameValue
Genbank descriptionC05011A05SK AbsAOv1 Citrus clementina cDNA clone C05011A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294094 ID=CX294094; Name=CX294094; organism=Citrus clementina; type=EST; length=453bp
AATGTATGGTTGTGGGACCGTGTCCGTGTCAGTGGTGGGGCTTATGGAGG
TTTCTGCGACTTTGATTCTCATTCAGGAGTATTCTCATTTTTATCTTATC
GGGACCCCAACTTGTTAAAAACACTCGACATATATGACGGAACTGTGGAT
TTCTTGCGGGAGTTGGAAATGGATGATGATACATTAACTAAAGCAATTAT
TGGGACCATTGGAGATGTAGATGCATACCAGCTGCCTGATGCCAAAGGTT
ATAGTAGTTTGCTACGCCATTTATTAGGAATCACAGAAGAAGAAAGACAA
AGGAGGCGAGAAGAGATCTTATCTACAAGTTTGAAGGACTTCAAGGAATT
TGCTGATGTATTGGAGGCCATAAAAGATAGAGGAGTTGCAGTTGCGGTGG
CGTCTCCTGATGATGTTGATGCTGCAAACAAAAAGCGTGCCAATTTGTTT
GAA
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