CX294097
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294097 vs. ExPASy Swiss-Prot
Match: RPB4_MOUSE (DNA-directed RNA polymerase II subunit RPB4 OS=Mus musculus GN=Polr2d PE=2 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23 Identity = 54/137 (39.42%), Postives = 92/137 (67.15%), Query Frame = 2 Query: 38 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIRKFE 448 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ R F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of CX294097 vs. ExPASy Swiss-Prot
Match: RPB4_HUMAN (DNA-directed RNA polymerase II subunit RPB4 OS=Homo sapiens GN=POLR2D PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 3.569e-23 Identity = 54/137 (39.42%), Postives = 92/137 (67.15%), Query Frame = 2 Query: 38 SGEEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIRKFE 448 +G+ EE+A++L EF A+ L+N EV ++L+H+ +Q + D+ ++S+VF K+L Y RFSR+KN + + VR +L + +L +FEL L NLCPET EE+ A++PS++ R +DE ++++L+D+ R F+ Sbjct: 10 AGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDE--QELSEVFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEGR---FEDEELQQILDDIQTKRSFQ 141
BLAST of CX294097 vs. ExPASy Swiss-Prot
Match: RPB4_DICDI (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum GN=polr2d PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 3.693e-20 Identity = 53/147 (36.05%), Postives = 86/147 (58.50%), Query Frame = 2 Query: 44 EEEENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDD-------------PMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIRKF 445 +EEE+ LK + AK L+N EVAI+L+H+ + + +N + + F K+L Y ++FSRYKN +++QVR LS+ L EFE+ L NLCPE +EA +++PS+K +D+ ++ +L++LS +RKF Sbjct: 12 QEEEDLTTLKFPRDLKDAKFLLNSEVAILLEHRKGISESEGTEFPQNTLLIHLYYNSINDIIRTFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLKKM----EDDELQAILDELSNLRKF 154
BLAST of CX294097 vs. ExPASy Swiss-Prot
Match: RPB4_DROME (DNA-directed RNA polymerase II 16 kDa polypeptide OS=Drosophila melanogaster GN=Rpb4 PE=1 SV=5) HSP 1 Score: 92.4337 bits (228), Expect = 1.552e-18 Identity = 49/133 (36.84%), Postives = 81/133 (60.90%), Query Frame = 2 Query: 50 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIRKFE 448 +E+AA+L+ EF A+ L+ EV ++LDH+ + Q S D + S+VF K+ Y F ++KN + + R +L + +L +FEL LGNLCPE EEA A++PS++ R +DE + ++L+D+ R + Sbjct: 11 DEDAADLQFPKEFENAETLLISEVHMLLDHR--KRQNESADEEQEFSEVFMKTYAYTDSFRKFKNKETIMSARSLLMQKKLHKFELAALGNLCPEAPEEAKALIPSLEGR---FEDEELRQILDDIGTKRSLQ 138
BLAST of CX294097 vs. ExPASy Swiss-Prot
Match: RPB4_SCHPO (DNA-directed RNA polymerase II subunit rpb4 OS=Schizosaccharomyces pombe GN=rpb4 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11 Identity = 42/133 (31.58%), Postives = 74/133 (55.64%), Query Frame = 2 Query: 50 EENAAELKIGDEFLKAKCLMNCEVAIILDHKYEQLQQTSDDPMNQVSQVFEKSLQYVKRFSRYKNPDAVRQVREILSRYQLAEFELCVLGNLCPETVEEAIAMVPSIKTRGRAHDDEAIEKMLNDLSLIRKFE 448 EE+AA+LK+G EF L E I+++ Q + ++ + ++ V +K++ Y F+R+K +A IL + +FE LG LC E EEA ++PS+ + DD+ ++ +L++LS +RKF+ Sbjct: 7 EEDAAQLKLGPEFENEDMLTVSEAKILIETVLAQRARETNGEI-PMTDVMKKTVAYFNVFARFKTAEATYACERILGN-RFHKFERAQLGTLCCEDAEEARTLIPSLANK---IDDQNLQGILDELSTLRKFQ 134 The following BLAST results are available for this feature:
BLAST of CX294097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX294097 ID=CX294097; Name=CX294097; organism=Citrus clementina; type=EST; length=558bpback to top |