CX294110

Overview
NameCX294110
Unique NameCX294110
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig818 contig Ccv1_Contig818:192..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BARQU (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella quintana GN=clpX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.023e-13
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F E ALRVIAKKA  + TGARGLR+I+E IL E M+E+P ++
Sbjct:  332 LVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTGARGLRSIMEKILLETMFELPTLE 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BARHE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella henselae GN=clpX PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV+L F E ALRVIAKKA  + TGARGLR+I+E IL E M+E+P
Sbjct:  332 LVKQYQRLFEMENVELAFHEDALRVIAKKAIERKTGARGLRSIMEKILLETMFELP 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_PARL1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=clpX PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 34/59 (57.63%), Postives = 48/59 (81.36%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY+RLF M NV+L F+E+ALR +++KA  + TGARGLR+ILESIL + M+E+P ++
Sbjct:  330 LVKQYERLFEMENVRLTFSEEALRAVSRKAIERKTGARGLRSILESILLDTMFELPTLE 388          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_CHRSD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=clpX PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    7 KQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            KQY  LF+M  V+L F E ALR +A KA A+NTGARGLR+ILES+L + MYE+P ++
Sbjct:  335 KQYVHLFAMEGVELEFREDALRAVAHKAMARNTGARGLRSILESVLLDTMYEVPSLE 391          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SYMTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Symbiobacterium thermophilum GN=clpX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.170e-12
Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY++L  ++N++L F E+A+R IAK+A  +NTGARGLRAI+E I+T+ MYE+P
Sbjct:  329 LVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGARGLRAIIEDIMTDVMYEVP 384          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_BART1 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV+L F E ALR IAKKA  + TGARGLR+I+E IL E M+E+P
Sbjct:  332 LVKQYQRLFEMENVELAFHEDALRAIAKKAIERKTGARGLRSIMEKILLETMFELP 387          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_ACIAD (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acinetobacter sp. (strain ADP1) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.529e-12
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L +QY+ LF M NV L F E ALR IAKKA  +NTGARGLR+I+E++L E MY++P  K
Sbjct:  332 LTRQYQSLFQMENVDLVFEESALRAIAKKALERNTGARGLRSIMENVLLETMYDLPSRK 390          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_SHEDO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIPDVK 177
            L KQY  LF M NV+L F E AL+ IAKKA ++ TGARGLR+I+E IL + MY++P VK
Sbjct:  334 LTKQYGALFEMENVELEFREDALKAIAKKAMSRKTGARGLRSIVEGILLDTMYDLPTVK 392          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METS4 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium sp. (strain 4-46) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV L F E+AL ++A+KA  + TGARGLR+ILESIL E MY++P
Sbjct:  330 LVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP 385          
BLAST of CX294110 vs. ExPASy Swiss-Prot
Match: CLPX_METNO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=clpX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.997e-12
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:    1 LGKQYKRLFSMNNVKLHFTEKALRVIAKKATAKNTGARGLRAILESILTEAMYEIP 168
            L KQY+RLF M NV L F E+AL ++A+KA  + TGARGLR+ILESIL E MY++P
Sbjct:  330 LVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP 385          
The following BLAST results are available for this feature:
BLAST of CX294110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
CLPX_BARQU4.023e-1362.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BARHE5.254e-1366.07ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PARL16.862e-1357.63ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CHRSD8.962e-1359.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYMTH1.170e-1257.14ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BART11.529e-1264.29ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACIAD1.529e-1259.32ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEDO1.997e-1259.32ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METS41.997e-1262.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METNO1.997e-1262.50ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC05011B12SK AbsAOv1 Citrus clementina cDNA clone C05011B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294110 ID=CX294110; Name=CX294110; organism=Citrus clementina; type=EST; length=538bp
CTGGGTAAGCAGTATAAGAGATTGTTCAGCATGAACAATGTCAAATTACA
TTTTACTGAAAAAGCACTAAGAGTAATTGCCAAAAAAGCTACAGCTAAGA
ATACTGGTGCCAGAGGTTTAAGAGCCATACTAGAAAGCATTCTAACTGAA
GCCATGTATGAGATTCCTGATGTTAAGACGGGAAGTGATGGGGTAGATGC
TGTTGTGGTAGATGAGGAGTCGGTGGGGTCAGTGGATGCCCCTGGATGCG
GAGGGAAAATTCTACGTGGAGAAGGTGCATTGGAGCGTTATCTAGTTGAA
GCCGAGCGGAAAGAGTCAGCGGAAAATGCATCTGAGAGGGAGTTGCAGGA
GAGTGAAGCAGAGATCTCAACGAGAGCCATGAGCATGTAGAAGTAGAAGC
ACCACGATGATTGTTGAAAGTTGTACAACGCATGTCTAATGTTATTTGTA
GAAATCATATTCATTAGTTGGTGTAATTATAATCCCCTTGTATTACAGGT
TCTTGAATTCGTTGGAAAGGAATAAGGAAAATATCATA
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