CX294119

Overview
NameCX294119
Unique NameCX294119
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15027 contig Ccv1_Contig15027:19..505. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.796e-22
Identity = 43/82 (52.44%), Postives = 62/82 (75.61%), Query Frame = 3
Query:  231 LSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYA 476
            L C +WR  VETNN+  W T+PE+CADYV  YM+G  Y+++ + V++EA  +A+S+ L  DG+D+W+FD+DET L NLPYY+
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYS 122          
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 6.481e-19
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  234 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNG 485
            +C SW LGVET+N+I + TVP  C DYV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYG 135          
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.166e-18
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 3
Query:  234 SCLSWRLGVETNNVIGWATVPEKCADYVGHYML-GQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNG 485
            +C SW LGVET+N+I + TVP  C  YV  Y++  +QY+ DS+ V  EA  +A+ L L  D  ++W+FD+D+T L ++PYYAK G
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYG 140          
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  225 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNG 485
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHG 122          
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.011e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 3
Query:  225 PGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNG 485
            P + C SWRL VE +N+ G+ T+PE+C +    Y+ G+QYR DS+ V  +A  +A+ L +    KD +VF ID T L N+PYY K+G
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHG 119          
BLAST of CX294119 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.069e-13
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  165 GIPHQNHLLRPKAG--SRNNDVPGLSCLSWRLGVETNNVIGWATVPEKCADYVGHYMLGQQYRLDSEVVANEAILHAQSLTLAGDGKDIWVFDIDETSLCNLPYYAKNG 485
            G  +Q   LR K G   R+++V    C S+RL VE +N+  + T+PE+C +    Y+ G+Q+R DS+ V  +A  +A    +     DI++F ID T L N+PYY K+G
Sbjct:   20 GAGYQRFPLRMKTGYGERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREV--HHNDIFIFGIDNTVLSNIPYYEKHG 123          
The following BLAST results are available for this feature:
BLAST of CX294119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC4.796e-2252.44Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSP2_ARATH6.481e-1948.24Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH7.166e-1847.06Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
VSPA_SOYBN3.011e-1644.83Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN3.011e-1644.83Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN4.069e-1337.61Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
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Properties
Property NameValue
Genbank descriptionC05011C09SK AbsAOv1 Citrus clementina cDNA clone C05011C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294119 ID=CX294119; Name=CX294119; organism=Citrus clementina; type=EST; length=487bp
GGAGGAAAAACAATATTACAGTTGTAATGAGCATGGGAGGGGTGTCACTG
CCATTATTTTTCTTTTTTCTGGCTACCATATCAGCAACATCCCATGGATT
TAGCATGGACATCCGCCATCTTTTTCTGGCTACCATACCAGCAACATCCC
ATGGATTTAGCATGGGCATCCCCCATCAGAATCATCTTCTCCGACCGAAA
GCCGGTTCCCGGAACAACGATGTGCCCGGCTTGTCCTGCCTGAGTTGGCG
ACTCGGAGTGGAAACTAATAACGTTATAGGATGGGCGACTGTTCCCGAAA
AATGTGCAGACTACGTGGGGCATTACATGTTAGGCCAGCAGTACCGCCTG
GACTCTGAAGTGGTTGCTAATGAGGCCATTCTCCATGCTCAGAGCCTCAC
GCTTGCTGGCGACGGCAAGGACATTTGGGTTTTCGACATAGATGAAACCT
CGCTATGTAATTTGCCATATTATGCTAAGAATGGATT
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