CX294126

Overview
NameCX294126
Unique NameCX294126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10735 contig Ccv1_Contig10735:531..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.181e-59
Identity = 111/163 (68.10%), Postives = 138/163 (84.66%), Query Frame = 1
Query:    1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGIPQ 489
            V+ VG VDP  YP+PKTKLT EFLRD +  R RTN I+AVARIRNALA+ATH+F Q+  FLYIHTPIITTSDCEGAGEMFQVTTLI+  +++E++LI NPPP+EAD+EAA+L+VKE+GEAVA+LK  KA KE I+ASV +L+ AK +LA +EER +LKPG+P+
Sbjct:  128 VIAVGTVDPTTYPLPKTKLTPEFLRDVLHLRSRTNLISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINHTERVEQDLIDNPPPTEADVEAARLIVKERGEAVAQLKVAKASKEEITASVAQLSVAKASLAHVEERLRLKPGLPK 290          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 4.181e-59
Identity = 110/164 (67.07%), Postives = 139/164 (84.76%), Query Frame = 1
Query:    1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEADIEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGIPQK 492
            V+DVG VD +KYP+PKTKLTLE LRD +  R RTN+I+AVARIRNALA+ATH+F Q+  FLYIHTPIITTSDCEGAGEMFQ TTLI+  ++LE++LI NPPP+EAD+EAA+L+V E+G  VA+LK+ KA KEAI+A+V EL  AKE  A ++ERS+L+PG+P+K
Sbjct:  131 VIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQATTLINYTERLEQDLIDNPPPTEADVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPGLPKK 294          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYNC2_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 2 OS=Arabidopsis thaliana GN=SYNC2 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 4.078e-30
Identity = 73/172 (42.44%), Postives = 103/172 (59.88%), Query Frame = 1
Query:    1 VLDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIKNPPPSEAD---IEAAKLVVKEKGEAVAKLKSDKAGKEAISASVTELTKAKENLARLEERSKLKPGI---PQKME 498
            +L VG VDP KYP+ K +L L  LRD   FRPRT T+ +V R+ +AL  A+HTFLQ  GF Y+  P+ITT+   G GEMF+VTTL+   D  E+   K PP  E D   I+  K V+KEK   +  LK   + +E + A+V +L K  +  +++E + K K G    P+K++
Sbjct:  201 LLHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTFLQYHGFQYVQVPVITTT--TGFGEMFRVTTLLGKTDDKEE---KKPPVQEKDGFSIDTVKAVIKEKTRLIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTGTLVKPEKLD 367          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  DP  Y + K + T EFLR     RPRTNTI AV R+RNALA+ATH F QK+GFLYIHTPIIT SDCEGAG+MFQVTTL
Sbjct:  102 IGKCDPEVYLLQKKRHTFEFLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQVTTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SYNFM (Asparaginyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=asnS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.560e-24
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            G  DPA YP+ K + + EFLR     RPRTNTI AV+R+RN L+YA H F Q +GF YIHTPIIT SDCEGAGEMF+VTTL
Sbjct:  103 GTADPAVYPLQKKRHSFEFLRQIGHLRPRTNTIGAVSRVRNRLSYAIHQFFQDRGFYYIHTPIITASDCEGAGEMFRVTTL 183          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_TREDE (Asparaginyl-tRNA synthetase OS=Treponema denticola GN=asnS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.271e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDADKLEKELIK 294
            G  D  KYP+ K + ++EFLRD    R RTNT  AVARIR+ +AYA HTF Q++GF Y+HTPIIT SDCEGAGEMF VTT   D ++  K+ +K
Sbjct:  101 GDADQEKYPLQKKRHSMEFLRDIAHLRARTNTFGAVARIRSQMAYAIHTFFQERGFQYVHTPIITGSDCEGAGEMFHVTTF--DIEETVKKALK 192          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.660e-23
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISD 264
            VG  DP  YP+ K + +LEFLR+    RPRTN I+AVAR+R+ L+YA H F Q++GF  +HTPIITTSDCEGAGEMFQV     D
Sbjct:   97 VGWADPETYPLQKKRHSLEFLREISHLRPRTNAISAVARVRSRLSYAVHNFFQEKGFTQVHTPIITTSDCEGAGEMFQVAATGKD 181          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_THEEB (Asparaginyl-tRNA synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.835e-22
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            G  DP  YP+ K + + EFLR     RPRTNT+ AV R+RNA A A H F Q++GFL++HTPIIT SDCEGAGE+F VTTL
Sbjct:   98 GTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTL 178          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_SYNY3 (Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=asnS PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.396e-22
Identity = 49/82 (59.76%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   10 VGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTL 255
            +G  DP  YP+ K + + EFLR     RPRTNTI AV R+RNA A A H F Q++GFL++HTPIIT SDCEGAG++F+VTTL
Sbjct:   98 LGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTL 179          
BLAST of CX294126 vs. ExPASy Swiss-Prot
Match: SYN_PORGI (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis GN=asnS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.130e-22
Identity = 49/85 (57.65%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   13 GMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFLYIHTPIITTSDCEGAGEMFQVTTLISDA 267
            G  DPA YP+ K   TLEFLR+    RPRTNT  A+ RIR+ +A A HTF   +G+ Y H P+IT SDCEGAG+MFQVTTL  D+
Sbjct:  102 GTADPATYPLQKKGHTLEFLREIAHLRPRTNTFGAIYRIRHHMAIAIHTFFHNKGYYYFHAPLITASDCEGAGQMFQVTTLNPDS 186          
The following BLAST results are available for this feature:
BLAST of CX294126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
SYNC3_ARATH4.181e-5968.10Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab... [more]
SYNC1_ARATH4.181e-5967.07Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab... [more]
SYNC2_ARATH4.078e-3042.44Asparaginyl-tRNA synthetase, cytoplasmic 2 OS=Arab... [more]
SYN_PARUW1.039e-2568.29Asparaginyl-tRNA synthetase OS=Protochlamydia amoe... [more]
SYN_SYNFM2.560e-2465.43Asparaginyl-tRNA synthetase OS=Syntrophobacter fum... [more]
SYN_TREDE1.271e-2357.45Asparaginyl-tRNA synthetase OS=Treponema denticola... [more]
SYN_DESPS1.660e-2360.00Asparaginyl-tRNA synthetase OS=Desulfotalea psychr... [more]
SYN_THEEB1.835e-2260.49Asparaginyl-tRNA synthetase OS=Thermosynechococcus... [more]
SYN_SYNY32.396e-2259.76Asparaginyl-tRNA synthetase OS=Synechocystis sp. (... [more]
SYN_PORGI3.130e-2257.65Asparaginyl-tRNA synthetase OS=Porphyromonas gingi... [more]

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Properties
Property NameValue
Genbank descriptionC05011D07SK AbsAOv1 Citrus clementina cDNA clone C05011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294126 ID=CX294126; Name=CX294126; organism=Citrus clementina; type=EST; length=502bp
GTGCTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTCTACATTCACACTCCAAT
TATCACCACCAGTGATTGTGAGGGTGCTGGTGAGATGTTTCAAGTTACAA
CTCTAATAAGTGATGCTGACAAGTTGGAGAAGGAACTGATCAAGAATCCT
CCTCCATCAGAAGCTGACATAGAAGCCGCCAAGCTTGTTGTCAAGGAGAA
AGGAGAGGCTGTTGCAAAACTAAAATCTGATAAAGCAGGCAAGGAGGCGA
TAAGTGCTAGTGTTACTGAACTTACAAAAGCGAAAGAGAATCTTGCAAGG
CTCGAGGAAAGATCAAAGCTTAAGCCAGGAATCCCACAAAAGATGGAAGA
TT
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