CX294129

Overview
NameCX294129
Unique NameCX294129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length439
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294129_ssr299 microsatellite CX294129_ssr299:299..308. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX294129 vs. ExPASy Swiss-Prot
Match: C79A1_SORBI (Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP79A1 PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.815e-13
Identity = 37/57 (64.91%), Postives = 41/57 (71.93%), Query Frame = 2 
Query:   11 GSEMSVMLLARLLQGFNWSAPSDEEMVDLSESKCDLLMAKPLHARAKPRLPADLYPA 181
            G+ MSVML  RLLQGF WS P+  E VDLSESK D  MA PL   A+PRLPA LYP+
Sbjct:  499 GTAMSVMLFGRLLQGFTWSKPAGVEAVDLSESKSDTFMATPLVLHAEPRLPAHLYPS 555
The following BLAST results are available for this feature:
BLAST of CX294129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
C79A1_SORBI1.815e-1364.91Tyrosine N-monooxygenase OS=Sorghum bicolor GN=CYP... [more]
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Properties
Property NameValue
Genbank descriptionC05011D11SK AbsAOv1 Citrus clementina cDNA clone C05011D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294129 ID=CX294129; Name=CX294129; organism=Citrus clementina; type=EST; length=439bp
TACGGCCGGGGGGTCCGAGATGTCTGTAATGCTTTTGGCAAGGCTTCTTC
AAGGTTTTAATTGGAGCGCGCCATCGGATGAGGAGATGGTTGACCTTTCC
GAGTCAAAATGCGACCTCCTAATGGCTAAGCCACTGCATGCTCGTGCAAA
GCCCCGCTTGCCTGCTGATTTATACCCAGCTAATAATTAAATGATGTTAA
CCGTTCTTTATGTTATCTTCATTCTTTAATTTAATGTAATTCTTCATTAT
CTCACGATTTATCTATCTTGAACGCTTTGCCATCTCGAAATAAATATTTC
TCTCTCTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTTTGGGGCCCC
CCTGGCCCATTTAATTTTTAATTTGAAAAAATTTTTTGCGGGGGCCCCAA
TTTGGGCCCCTTTGGCCAATTCCCCCTAAGGGGGGGCCT
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