CX294131

Overview
NameCX294131
Unique NameCX294131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length527
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10872 contig Ccv1_Contig10872:438..964. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX294131 vs. ExPASy Swiss-Prot
Match: REMO_SOLTU (Remorin OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 6.545e-37
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 3 
Query:   12 WEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 320
            WEESEK+KAENKAQKK+SA+ AWEN              EQLE+KKAEY EKMKNK+AL+HKEAEEKRAM+EA+RGED+LKAEE+AAKYRATGT PKK+LG F
Sbjct:   96 WEESEKSKAENKAQKKVSAIGAWENSKKANLEAELKKMEEQLEKKKAEYTEKMKNKIALLHKEAEEKRAMIEAKRGEDLLKAEELAAKYRATGTAPKKILGIF 198
[Close]
BLAST of CX294131 vs. ExPASy Swiss-Prot
Match: Y3126_ARATH (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana GN=At3g61260 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.773e-34
Identity = 70/103 (67.96%), Postives = 80/103 (77.67%), Query Frame = 3 
Query:   12 WEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 320
            WEESEK+KAENKA+KK++ V AWEN              EQLE+KKAEYAE+MKNKVA +HKEAEE+RAM+EA+RGEDVLKAEE AAKYRATG  PK   GCF
Sbjct:  110 WEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
[Close]
BLAST of CX294131 vs. ExPASy Swiss-Prot
Match: REMO_ARATH (Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.412e-31
Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 3 
Query:   12 WEESEKTKAENKAQKKLSAVAAWENXXXXXXXXXXXXXXEQLERKKAEYAEKMKNKVALVHKEAEEKRAMVEARRGEDVLKAEEIAAKYRATGTTPKKLLGCF 320
            WEESEK+KAEN+AQKK+S V AWEN              E+LE+KKA+Y EKMKNKVA +HK AEEKRAMVEA++GE++LKAEE+ AKYRATG  PK   GCF
Sbjct:   88 WEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAIHKLAEEKRAMVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190
The following BLAST results are available for this feature:
BLAST of CX294131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
REMO_SOLTU6.545e-3771.84Remorin OS=Solanum tuberosum PE=1 SV=1[more]
Y3126_ARATH6.773e-3467.96Uncharacterized protein At3g61260 OS=Arabidopsis t... [more]
REMO_ARATH1.412e-3164.08Remorin OS=Arabidopsis thaliana GN=DBP PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05011E01SK AbsAOv1 Citrus clementina cDNA clone C05011E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294131 ID=CX294131; Name=CX294131; organism=Citrus clementina; type=EST; length=527bp
TACGGCCGGGATGGGAAGAGAGTGAAAAAACAAAAGCAGAGAATAAGGCT
CAGAAAAAGCTCTCAGCTGTTGCTGCATGGGAAAATAGCAAGAAAGCATC
TCTAGAAGCCAAACTGAAAAAGATTGAGGAACAACTGGAGAGGAAGAAGG
CAGAGTATGCTGAAAAAATGAAAAATAAGGTAGCTCTAGTTCACAAGGAA
GCAGAAGAGAAAAGGGCAATGGTTGAAGCTAGACGGGGAGAAGACGTTCT
TAAGGCTGAGGAGATAGCTGCAAAATATCGGGCTACTGGGACCACTCCAA
AGAAGCTCCTCGGTTGCTTCTGAAATCAAATTGTTTTTGCAAGTGGTATA
TTTTTTGTGTTTATGATTATGACTCCCAACTTTATATCTGTATACTTTCT
TGTGTCATTGGTGTGCTGTTTTGTGTGTAAATCTCAATGGAACTAAAGCA
AATGATAAGATCGAAGTGTTGTGGAATAGAAGTACTATCTGTCTTTTTAT
TTGTTTGAACAATAAATATGACTTTCT
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