CX294134

Overview
NameCX294134
Unique NameCX294134
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length539
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSI--VGSNSKLFIDCKLQQNGNGSGFEEMQSQVPN-IGVVRLFGVNILEDP 236
            SSQSYVLTKGWSRFVKEKG+ AGD V F+RS    G + KLFIDCKL ++   +         P+ +  VRLFGV++L  P
Sbjct:  277 SSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAP 357          
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.639e-14
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSIVGSNSKLFIDCKLQQNGNGSGFEEMQSQVPNIGVVRLFGVNI 224
            SSQSYVLTKGWSRFV+EKG++AGDT+ F  S  G +  LFIDCK       +G E+  +      VVRLFG++I
Sbjct:   76 SSQSYVLTKGWSRFVREKGLRAGDTIVFSGSAYGPDKLLFIDCKKNNTAAATGDEKPITSGEATRVVRLFGMDI 149          
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.383e-13
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSIVGSNSKLFIDCKLQQNGNG--------SGFEEMQSQVPNIGVVRLFGVNIL 227
            SSQSYVLTKGWSRFVKEKG+ AGD V F+R+  G N++LFIDCK++             S      +  P +  +RLFGV++L
Sbjct:  269 SSQSYVLTKGWSRFVKEKGLHAGDAVGFYRA-AGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDLL 350          
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.806e-13
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSIVGSNSKLFIDCKLQQNGNG----SGFEEMQSQVPNIGVVRLFGVNI 224
            SSQSYVLTKGWSRFV+EKG++AGDT+ F RS  G +  LFIDCK           +G E   +      VVRLFGV+I
Sbjct:  249 SSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDKLLFIDCKKNNAAAATTTCAGDERPTTSGAEPRVVRLFGVDI 326          
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.406e-12
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSIV--GSNSKLFIDCKLQQNGNGSGFEEMQSQVPNIGVVRLFGVNILED 233
            SSQSYVLTKGWSRFV+EKG++ GDTV+F RS    G+   L IDCK  +  N +  ++  ++V    VV+LFGV+I  D
Sbjct:  241 SSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKKMERNNLATVDD-DARV----VVKLFGVDIAGD 314          
BLAST of CX294134 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.883e-11
Identity = 43/74 (58.11%), Postives = 51/74 (68.92%), Query Frame = 3
Query:    3 SSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSIVGSNSKLFIDCKLQQNGNGSGFEEMQSQVPNIGVVRLFGVNI 224
            SSQSYVLTKGWSRFVKEK ++AGD V+F RS  G   +L+ID K++     SG  E   QV    VVRLFGV+I
Sbjct:  248 SSQSYVLTKGWSRFVKEKNLRAGDVVTFERS-TGLERQLYIDWKVR-----SGPRENPVQV----VVRLFGVDI 311          
The following BLAST results are available for this feature:
BLAST of CX294134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y1934_ORYSJ3.291e-1554.32AP2/ERF and B3 domain-containing protein Os01g0693... [more]
Y2641_ORYSJ3.639e-1454.05B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y5498_ORYSJ1.383e-1349.40AP2/ERF and B3 domain-containing protein Os05g0549... [more]
Y1410_ORYSJ1.806e-1353.85AP2/ERF and B3 domain-containing protein Os01g0141... [more]
Y1407_ORYSJ3.406e-1251.90Putative AP2/ERF and B3 domain-containing protein ... [more]
RAV2_ARATH2.883e-1158.11AP2/ERF and B3 domain-containing transcription rep... [more]
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Properties
Property NameValue
Genbank descriptionC05011E05SK AbsAOv1 Citrus clementina cDNA clone C05011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294134 ID=CX294134; Name=CX294134; organism=Citrus clementina; type=EST; length=539bp
GTAGCAGCCAGAGTTATGTGTTGACAAAGGGGTGGAGCAGATTCGTTAAG
GAGAAAGGCGTGAAAGCTGGAGATACGGTGAGCTTTTGGAGATCTATTGT
TGGGTCTAATTCAAAGTTGTTCATTGATTGCAAGCTGCAACAAAATGGAA
ATGGGTCAGGCTTTGAAGAGATGCAGAGCCAAGTTCCAAATATCGGTGTA
GTCAGATTGTTTGGAGTCAATATTTTAGAGGATCCAAACAATTTGTGTTG
TAGATAATATGAGGTTTCTGTAAAAGTAAGAAGAGGCTGAGAGAGTTCCA
AAAAGGCTAGCTAGTTATACAAGAGGTTAATTGACTGAAGATCATGAAGT
GCTTTTATATAATTTGCTTTCGCAATTTTTTTTTTCTTGGTTCGTTTATG
GGCCACGTTAAAAGTTACAAACTAGTTCCACGATAATTAGATTTAATAGA
AGACAAATGCTAACTTAGGCCACACAAATTATGCGGGTTCCATTAATGTG
ATATTGTTGTTATATGTGACGTAGTACAGTTGAATGTAC
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