CX294135

Overview
NameCX294135
Unique NameCX294135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294135_ssr29 microsatellite CX294135_ssr29:29..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14798 contig Ccv1_Contig14798:1..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL141_ARATH (60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 5.419e-60
Identity = 117/134 (87.31%), Postives = 124/134 (92.54%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKRENAA 481
            M FKR+VEIGRVALVNYG+DYGKLVVIVDV+DQNRALVDAPDM R QMN KRLSLTDI IDINRVP+KK LIEAMEKADVKNKWE SSWGRKLIVQKRRAALNDFDRFK+MLAKIK+ G+VRQEL KLKRE AA
Sbjct:    1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKRAGIVRQELAKLKREIAA 134          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL142_ARATH (60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.207e-59
Identity = 116/134 (86.57%), Postives = 124/134 (92.54%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKRENAA 481
            M FKRYVEIGRVALVNYG+D+GKLVVIVDV+DQNRALVDAPDM R QMNFKRLSLTDI IDINRVP+KK+LIEAMEKADVKNKWE SSWGRKLIVQKRRA LNDFDRFK+MLAKIKK G+VRQEL KLK+E  A
Sbjct:    1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAPDMERIQMNFKRLSLTDIVIDINRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAKLKKEITA 134          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_PEA (Probable 60S ribosomal protein L14 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.169e-54
Identity = 105/133 (78.95%), Postives = 118/133 (88.72%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPDMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKRENA 478
            MPFKR+VEIGRVAL+NYGKDYG+LVVIVDV+DQ RALVDAPDM RS +NFKRLSLTD+KIDI RVP+KK LI+A+E ADVKNKW  SSWGRKLIV+K RAALNDFDRFK+MLAKIK+   VRQEL KLK+  A
Sbjct:    1 MPFKRFVEIGRVALINYGKDYGRLVVIVDVIDQTRALVDAPDMERSPINFKRLSLTDLKIDIKRVPKKKDLIKALEAADVKNKWAKSSWGRKLIVKKTRAALNDFDRFKIMLAKIKRAAGVRQELAKLKKTAA 133          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_LUMRU (60S ribosomal protein L14 OS=Lumbricus rubellus GN=RPL14 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.078e-27
Identity = 63/132 (47.73%), Postives = 85/132 (64.39%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+R+VEIGRVA   YG D GKLV IVDV+DQNRALVD P   + R  MNFK L LT++K       +   + +A EK ++  KWE S   +K+  +++R  L DF+RFKLM AK  +  L++ E GKL++
Sbjct:    1 MSFRRFVEIGRVARAVYGPDQGKLVAIVDVIDQNRALVDGPCTHVARKSMNFKELELTNLKAKFPHSAKTGVVKKAWEKDEISKKWEESHLAKKIAAKEKRKTLTDFERFKLMKAKQARNRLIKIEFGKLRK 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_MOUSE (60S ribosomal protein L14 OS=Mus musculus GN=Rpl14 PE=2 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 3.545e-27
Identity = 61/132 (46.21%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+RYVE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRYVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_RAT (60S ribosomal protein L14 OS=Rattus norvegicus GN=Rpl14 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 1.032e-26
Identity = 60/132 (45.45%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+R+VE+GRVA +++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL+R
Sbjct:    1 MVFRRFVEVGRVAYISFGPHAGKLVAIVDVIDQNRALVDGPCTRVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINTKWAATRWAKKIDARERKAKMTDFDRFKVMKAKKMRNRIIKTEVKKLQR 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_HUMAN (60S ribosomal protein L14 OS=Homo sapiens GN=RPL14 PE=1 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 5.119e-26
Identity = 58/132 (43.94%), Postives = 87/132 (65.91%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +       +K + +A +KAD+  KW  + W +K+  ++R+A + DFDRFK+M AK  +  +++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSAHQKYVRQAWQKADINTKWAATRWAKKIEARERKAKMTDFDRFKVMKAKKMRNRIIKNEVKKLQK 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_GRIJA (60S ribosomal protein L14 OS=Griffithsia japonica GN=RPL14 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.119e-26
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAPD--MVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEK---ADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLK 466
            M F R+VE GRVALV+YG+   KLVVIVD+LDQNR LVD+P   + R  +N KR++LT IK+D   + R   + E   K   A V   +  S WG+KL  +++RAAL+DF RFK+M+A++KK   +  EL KLK
Sbjct:    1 MTFTRFVEAGRVALVSYGEHLNKLVVIVDILDQNRILVDSPSHGLKRKVINVKRIALTSIKVD--DIARGAPVAEVKSKYTAAKVDETFAASGWGKKLAKREKRAALDDFGRFKVMVARMKKSKAINAELAKLK 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_PIG (60S ribosomal protein L14 OS=Sus scrofa GN=RPL14 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.489e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKLEVKKLQK 132          
BLAST of CX294135 vs. ExPASy Swiss-Prot
Match: RL14_BOVIN (60S ribosomal protein L14 OS=Bos taurus GN=RPL14 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.945e-25
Identity = 58/132 (43.94%), Postives = 88/132 (66.67%), Query Frame = 2
Query:   80 MPFKRYVEIGRVALVNYGKDYGKLVVIVDVLDQNRALVDAP--DMVRSQMNFKRLSLTDIKIDINRVPRKKSLIEAMEKADVKNKWENSSWGRKLIVQKRRAALNDFDRFKLMLAKIKKGGLVRQELGKLKR 469
            M F+R+VE+GRVA V++G   GKLV IVDV+DQNRALVD P   + R  M FK + LTD  +      R+K + +A EKAD+  KW  + W +K+  ++++A + DFDR+K+M A+  +  L++ E+ KL++
Sbjct:    1 MVFRRFVEVGRVAYVSFGPHAGKLVAIVDVIDQNRALVDGPCTQVRRQAMPFKCMQLTDFILKFPHSARQKYVRKAWEKADINAKWAATRWAKKIEAREKKAKMTDFDRYKVMKARKMRNRLIKIEVKKLQK 132          
The following BLAST results are available for this feature:
BLAST of CX294135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RL141_ARATH5.419e-6087.3160S ribosomal protein L14-1 OS=Arabidopsis thalian... [more]
RL142_ARATH1.207e-5986.5760S ribosomal protein L14-2 OS=Arabidopsis thalian... [more]
RL14_PEA1.169e-5478.95Probable 60S ribosomal protein L14 OS=Pisum sativu... [more]
RL14_LUMRU2.078e-2747.7360S ribosomal protein L14 OS=Lumbricus rubellus GN... [more]
RL14_MOUSE3.545e-2746.2160S ribosomal protein L14 OS=Mus musculus GN=Rpl14... [more]
RL14_RAT1.032e-2645.4560S ribosomal protein L14 OS=Rattus norvegicus GN=... [more]
RL14_HUMAN5.119e-2643.9460S ribosomal protein L14 OS=Homo sapiens GN=RPL14... [more]
RL14_GRIJA5.119e-2649.2560S ribosomal protein L14 OS=Griffithsia japonica ... [more]
RL14_PIG1.489e-2543.9460S ribosomal protein L14 OS=Sus scrofa GN=RPL14 P... [more]
RL14_BOVIN1.945e-2543.9460S ribosomal protein L14 OS=Bos taurus GN=RPL14 P... [more]

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Properties
Property NameValue
Genbank descriptionC05011E06SK AbsAOv1 Citrus clementina cDNA clone C05011E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294135 ID=CX294135; Name=CX294135; organism=Citrus clementina; type=EST; length=525bp
GGGAAACCCTAAATCGAAGCCTCTTGCCTCATTCATTCATCTCCTCGCTC
CTCCGGCAGAGCCTTGAATATCTTCGAAAATGCCGTTCAAGAGGTACGTG
GAGATAGGAAGAGTTGCTCTCGTTAATTACGGGAAGGACTATGGGAAGCT
TGTGGTCATCGTCGATGTCCTTGATCAAAACAGGGCTCTTGTTGATGCCC
CTGATATGGTGAGGAGCCAAATGAACTTCAAGAGGCTTTCTCTCACGGAT
ATTAAGATTGACATCAATCGAGTTCCCAGGAAGAAGTCTTTGATTGAAGC
CATGGAGAAGGCTGATGTGAAGAACAAATGGGAAAACAGCTCCTGGGGCA
GGAAGCTGATTGTCCAGAAAAGGAGAGCGGCACTGAATGATTTTGATAGG
TTCAAGCTCATGTTGGCCAAGATCAAGAAGGGTGGACTTGTTCGACAGGA
GCTTGGCAAACTCAAGAGGGAGAATGCAGCATAGAATTTCTCTCGTGTTC
CCCTTTCTGGTTTTTAGTTCTTACA
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