CX294193

Overview
NameCX294193
Unique NameCX294193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length295
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14677 contig Ccv1_Contig14677:813..1107. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.602e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHWIFWVGPF+GA LA+LYHQ+VI AIPFK
Sbjct:  246 IYNKDHAWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.602e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHWIFWVGPF+GA LA+LYHQ+VI AIPFK
Sbjct:  246 IYNKDHSWDDHWIFWVGPFIGAALAALYHQIVIRAIPFK 284          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.555e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHWIFWVGPF+GA LA+LYHQ+VI AIPFK
Sbjct:  245 IYNKDHAWDDHWIFWVGPFIGAALAALYHQLVIRAIPFK 283          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.631e-13
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHW+FWVGPF+GA LA+LYH VVI AIPFK
Sbjct:  245 IYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.631e-13
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHW+FWVGPF+GA LA+LYH VVI AIPFK
Sbjct:  245 IYNKDHSWDDHWVFWVGPFIGAALAALYHVVVIRAIPFK 283          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.742e-13
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  WDDHW+FWVGPF+GA LA+LYH +VI AIPFK
Sbjct:  245 IFNKDNAWDDHWVFWVGPFIGAALAALYHVIVIRAIPFK 283          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.742e-13
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I NKD  W+DHWIFWVGPF+GA LA++YHQV+I AIPFK
Sbjct:  248 IYNKDHAWNDHWIFWVGPFVGAALAAIYHQVIIRAIPFK 286          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.193e-13
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            + NK  GW+DHWIFWVGPF+GA LA+LYHQVVI AIPFK
Sbjct:  249 VFNKKIGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFK 287          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.089e-13
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I N+D  W+DHWIFWVGPF+GA LA++YHQV+I AIPFK
Sbjct:  248 IYNRDHAWNDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 286          
BLAST of CX294193 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.056e-12
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
Query:   10 ICNKDRGWDDHWIFWVGPFLGAGLASLYHQVVITAIPFK 126
            I N+D  W DHWIFWVGPF+GA LA++YHQV+I AIPFK
Sbjct:  251 IYNRDHAWSDHWIFWVGPFIGAALAAIYHQVIIRAIPFK 289          
The following BLAST results are available for this feature:
BLAST of CX294193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PIP15_ARATH5.602e-1479.49Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP14_ARATH5.602e-1479.49Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH9.555e-1479.49Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_VICFA3.631e-1376.92Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH3.631e-1376.92Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP12_ARATH4.742e-1374.36Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ4.742e-1374.36Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP2_PEA6.193e-1376.92Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP12_MAIZE8.089e-1371.79Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]
PIP13_MAIZE1.056e-1271.79Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05013C11SK AbsAOv1 Citrus clementina cDNA clone C05013C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294193 ID=CX294193; Name=CX294193; organism=Citrus clementina; type=EST; length=295bp
ACGGCCGGGATCTGCAACAAGGACCGCGGTTGGGATGACCACTGGATCTT
CTGGGTGGGACCATTCCTTGGAGCTGGACTCGCATCTTTGTACCACCAAG
TCGTGATCACAGCCATTCCCTTCAAATGAAGCTGATCGCTTCATCAACGT
TCGTGATTGCACCTGCATTTGTTTATGGCTGTTGCTGGTTTGCTTATGTG
TATTATAAAATATTAATTAGTCCTTTGTTCAAATCTGCTGGTGCTGGACC
TGGGCCTGCTTCTCTGTTTTCCTTCCCTAAAACGTTTTTTTTTTT
back to top