CX294205

Overview
NameCX294205
Unique NameCX294205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294205_ssr460 microsatellite CX294205_ssr460:460..469. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CATR_TETST (Caltractin (Fragment) OS=Tetraselmis striata PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   62 SGVV-FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            SG + FE+F   M  K+G     +E+   FRL  D++ G I+F++LK+ +  LG ++M+DEEL  M+ E D DGDG +NE EF  +M + S
Sbjct:   57 SGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELG-ENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 146          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CATR_SCHDU (Caltractin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.684e-12
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 2
Query:   62 SGVV-FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            SG + FE+F   M  K+G     +E+   FRL  D++ G I+F++LK+ +  LG ++M+DEEL  M+ E D DGDG +NE EF  +M + S
Sbjct:   77 SGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKISFKNLKRVAKELG-ENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTS 166          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CATR_SPESI (Caltractin (Fragment) OS=Spermatozopsis similis PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.652e-11
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   62 SGVV-FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            SG + FE+F   M  K+G     +E+   FRL  D+  G ITF++LK+ +  LG ++++DEE+  M+ E D DGDG +NE EF  +M + S
Sbjct:   57 SGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDQTGKITFKNLKRVAKELG-ENLTDEEIQEMIDEADRDGDGEINEEEFFRIMKKTS 146          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CETN2_BOVIN (Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 34/86 (39.53%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   74 FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            F DF   M +K+  +   +E+   F+L  D++ G I+F++LK+ +  LG +++SDEEL  M+ E D DGDG +NE EF  +M + S
Sbjct:   86 FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLSDEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CETN1_HUMAN (Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.806e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   68 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            + F DF   M +K+  +   +E+   FRL  D++ G I+F++LK+ +  LG ++++DEEL  M+ E D DGDG +NE EF  +M + S
Sbjct:   84 ISFNDFLAVMTQKMSEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELG-ENLTDEELQEMIDEADRDGDGEVNEEEFLRIMKKTS 170          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CETN2_MOUSE (Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   74 FEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLMFRLS 331
            F DF   M +K+  +   +E+   F+L  D++ G I+F++LK+ +  LG ++++DEEL  M+ E D DGDG +NE EF  +M + S
Sbjct:   86 FSDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELG-ENLTDEELQEMIDEADRDGDGEVNEQEFLRIMKKTS 170          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CETN1_MOUSE (Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.277e-11
Identity = 34/88 (38.64%), Postives = 53/88 (60.23%), Query Frame = 2
Query:   56 ANSGVVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLM 319
            A   + F DF   M +K+  +   +E+   FRL  D++ G I+F++LK+ +  LG + ++DEEL  M+ E D DGDG +NE EF  +M
Sbjct:   80 ATGKISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELG-ESLTDEELQEMIDEADRDGDGEVNEEEFLKIM 166          
BLAST of CX294205 vs. ExPASy Swiss-Prot
Match: CETN1_BOVIN (Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 33/84 (39.29%), Postives = 53/84 (63.10%), Query Frame = 2
Query:   68 VVFEDFFPAMVEKLGAEGFMQELSNGFRLLMDEDKGLITFESLKKNSALLGLQDMSDEELMCMLREGDLDGDGALNEMEFCTLM 319
            + F DF   M +K+  +   +E+   FRL  D++ G I+F++LK+ +  LG ++++DEEL  M+ E D DGDG +NE EF  +M
Sbjct:   84 ISFNDFLAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVAKELG-ENLTDEELQEMIDEADRDGDGEVNEDEFLRIM 166          
The following BLAST results are available for this feature:
BLAST of CX294205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CATR_TETST9.684e-1241.76Caltractin (Fragment) OS=Tetraselmis striata PE=2 ... [more]
CATR_SCHDU9.684e-1241.76Caltractin OS=Scherffelia dubia PE=2 SV=1[more]
CATR_SPESI1.652e-1140.66Caltractin (Fragment) OS=Spermatozopsis similis PE... [more]
CETN2_BOVIN2.818e-1139.53Centrin-2 OS=Bos taurus GN=CETN2 PE=2 SV=1[more]
CETN1_HUMAN4.806e-1138.64Centrin-1 OS=Homo sapiens GN=CETN1 PE=2 SV=1[more]
CETN2_MOUSE6.277e-1138.37Centrin-2 OS=Mus musculus GN=Cetn2 PE=1 SV=1[more]
CETN1_MOUSE6.277e-1138.64Centrin-1 OS=Mus musculus GN=Cetn1 PE=2 SV=1[more]
CETN1_BOVIN8.198e-1139.29Centrin-1 OS=Bos taurus GN=CETN1 PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC05013E03SK AbsAOv1 Citrus clementina cDNA clone C05013E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294205 ID=CX294205; Name=CX294205; organism=Citrus clementina; type=EST; length=476bp
GAGTCATTAGTTGTTCAAAGCTAGCTCTAGCCTTGATTATTGAACAATGG
CTTCTGCAAATAGTGGGGTTGTGTTTGAAGATTTCTTTCCTGCCATGGTC
GAGAAATTGGGAGCTGAAGGGTTCATGCAGGAGCTGTCTAACGGGTTTCG
TTTGCTAATGGATGAGGACAAAGGTTTGATCACTTTTGAGAGCCTGAAGA
AGAACTCTGCCCTGCTTGGATTACAAGACATGAGTGACGAAGAGTTGATG
TGCATGTTGAGAGAAGGTGATCTTGACGGTGATGGGGCTTTGAACGAAAT
GGAGTTTTGTACTTTGATGTTTAGGTTGAGTCCTGGCTTGATGAAAAATT
CTACCAATTTGTTCTTAGAAGCTTTAAATGTTGATGATTTTTAGCTTGTA
CTTTTGCTCATCATCTAGAGCTTCCTTCCTTATTATTTCTGAATCTTTAT
GTCCCTGGCTATATATATACATTACT
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