CX294208
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25 Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 LL +V F K++E LDALCD ++P +TE ++++REGDP+DEM+F+++GKL T T ++G +S++ L GDF GEEL+ WAL S ++P S RT++AL V+AF L ADDLK V Sbjct: 480 LLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY-------------LGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 598
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 2.439e-24 Identity = 55/133 (41.35%), Postives = 88/133 (66.17%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 NL+++V F ++E LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T +SG + LL++GDF GEEL+ WAL + ++P S RT++ALT V+AF L A++LK V Sbjct: 495 NLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 614
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24 Identity = 54/133 (40.60%), Postives = 88/133 (66.17%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 NL+++V F ++E LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T +SG + LL++GDF GEEL+ WAL + ++P S RT++ALT V+AF L A++LK V Sbjct: 501 NLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 620
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24 Identity = 55/132 (41.67%), Postives = 87/132 (65.91%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 L+++V F ++E LDA+C+ +KP FTE ++L+REGDP++EM+F+++G+L + T G S + R LL++GDF G+EL+ WAL + ++P S RT++ALT V+AF L+AD+LK V Sbjct: 508 LVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----TDGGRSGFYNR---------SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 626
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 109.383 bits (272), Expect = 1.210e-23 Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 +LLKKV F ++E LDA+CD +KP +TE+++ IREGDP++EM+FV++GKL + T ++G ++ + L+ DF GE+L+ WAL + S P S RT+QALT V+AF L ADDLK+V Sbjct: 467 DLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVY-------------LKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 586
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.581e-23 Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 L+++V F ++E LDA+C+ +KP +TE ++L+REGDP++EM+F+++G+L + T +SG + LL++GDF GEEL+ WAL + ++P S RT +ALT V+AF L+AD+LK V Sbjct: 507 LVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFV 625
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.064e-23 Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = 3 Query: 9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 L+++V F+ +++ LDA+C +KP FTE T+L+REGDP+DEM+F+++G+L + T +SG + LL++G+F GEEL+ WAL + ++P S RT++ALT V+AF L +++LK V Sbjct: 492 LVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFV 610
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 103.219 bits (256), Expect = 8.673e-22 Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 +LLKKV F ++E LDA+CD ++P +TE++++IREGDP+ EM+FV++G+L + T +SG ++ + L+ DF GE+L+ WAL + S P S RT+QALT V+AF L A+DLK V Sbjct: 466 DLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVN-------------LKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 585
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21 Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = 3 Query: 3 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404 ++L+++V F +++E LDA+C+ +KP TE T L+REGDP++EM+F+++G L +YT ++G +S L+ GDF GEEL+ WAL R +P S RT++A+ V+AF L A+DL+ V Sbjct: 463 FDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS-------------CLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFV 583
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 2.136e-20 Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = 3 Query: 6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410 +L+++V F ++++ LDA+C+ + + TE T+L+REGD I EM+F+++G+L + T ++G +S +L+ GDF GEEL+ WAL + + ++P S RT++AL V+AF L A+DLK V N Sbjct: 474 DLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSI-------------ILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVAN 595 The following BLAST results are available for this feature:
BLAST of CX294208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX294208 ID=CX294208; Name=CX294208; organism=Citrus clementina; type=EST; length=555bpback to top |