CX294208

Overview
NameCX294208
Unique NameCX294208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig95 contig Ccv1_Contig95:123..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.417e-25
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            LL +V  F K++E  LDALCD ++P  +TE ++++REGDP+DEM+F+++GKL T T    ++G  +S++             L  GDF GEEL+ WAL    S ++P S RT++AL  V+AF L ADDLK V
Sbjct:  480 LLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEY-------------LGAGDFCGEELLTWALDPHSSSNLPISTRTVRALMEVEAFALKADDLKFV 598          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.439e-24
Identity = 55/133 (41.35%), Postives = 88/133 (66.17%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            NL+++V  F  ++E  LDA+C+ +KP+ FTE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT++ALT V+AF L A++LK V
Sbjct:  495 NLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 614          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24
Identity = 54/133 (40.60%), Postives = 88/133 (66.17%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            NL+++V  F  ++E  LDA+C+ +KP+ +TE T+++REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT++ALT V+AF L A++LK V
Sbjct:  501 NLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RGLLKEGDFCGEELLTWALDPKAGSNLPSSTRTVKALTEVEAFALEAEELKFV 620          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24
Identity = 55/132 (41.67%), Postives = 87/132 (65.91%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            L+++V  F  ++E  LDA+C+ +KP  FTE ++L+REGDP++EM+F+++G+L + T      G  S  + R          LL++GDF G+EL+ WAL  +   ++P S RT++ALT V+AF L+AD+LK V
Sbjct:  508 LVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVT----TDGGRSGFYNR---------SLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFV 626          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.210e-23
Identity = 59/133 (44.36%), Postives = 86/133 (64.66%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            +LLKKV  F  ++E  LDA+CD +KP  +TE+++ IREGDP++EM+FV++GKL + T    ++G  ++ +             L+  DF GE+L+ WAL  + S   P S RT+QALT V+AF L ADDLK+V
Sbjct:  467 DLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVY-------------LKPSDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLV 586          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.581e-23
Identity = 54/132 (40.91%), Postives = 86/132 (65.15%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            L+++V  F  ++E  LDA+C+ +KP  +TE ++L+REGDP++EM+F+++G+L + T    +SG  +               LL++GDF GEEL+ WAL  +   ++P S RT +ALT V+AF L+AD+LK V
Sbjct:  507 LVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGDFCGEELLTWALDPKSGSNLPSSTRTAKALTEVEAFALIADELKFV 625          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.064e-23
Identity = 53/132 (40.15%), Postives = 86/132 (65.15%), Query Frame = 3
Query:    9 LLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            L+++V  F+ +++  LDA+C  +KP  FTE T+L+REGDP+DEM+F+++G+L + T    +SG  +               LL++G+F GEEL+ WAL  +   ++P S RT++ALT V+AF L +++LK V
Sbjct:  492 LVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLESVTTDGGRSGFFN-------------RSLLKEGEFCGEELLTWALDPKSGVNLPSSTRTVKALTEVEAFALTSEELKFV 610          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.673e-22
Identity = 57/133 (42.86%), Postives = 85/133 (63.91%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            +LLKKV  F  ++E  LDA+CD ++P  +TE++++IREGDP+ EM+FV++G+L + T    +SG  ++ +             L+  DF GE+L+ WAL  + S   P S RT+QALT V+AF L A+DLK V
Sbjct:  466 DLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRLVSATTNGGRSGFFNAVN-------------LKASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSV 585          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.342e-21
Identity = 53/134 (39.55%), Postives = 84/134 (62.69%), Query Frame = 3
Query:    3 WNLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIV 404
            ++L+++V  F +++E  LDA+C+ +KP   TE T L+REGDP++EM+F+++G L +YT    ++G  +S              L+  GDF GEEL+ WAL  R    +P S RT++A+  V+AF L A+DL+ V
Sbjct:  463 FDLVRRVPLFDQMDERMLDAICERLKPALCTEGTFLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNS-------------CLIGPGDFCGEELLTWALDPRPVVILPSSTRTVKAICEVEAFALKAEDLQFV 583          
BLAST of CX294208 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.136e-20
Identity = 51/135 (37.78%), Postives = 85/135 (62.96%), Query Frame = 3
Query:    6 NLLKKVQGFRKLNEVTLDALCDCVKPTFFTEHTHLIREGDPIDEMIFVVQGKLRTYTFKDIQSGSTSSDHKRYDGKNTRKEDLLQDGDFYGEELIDWALRDRFSFDIPKSNRTIQALTNVDAFMLMADDLKIVFN 410
            +L+++V  F ++++  LDA+C+ +  +  TE T+L+REGD I EM+F+++G+L + T    ++G  +S              +L+ GDF GEEL+ WAL  + + ++P S RT++AL  V+AF L A+DLK V N
Sbjct:  474 DLVRRVPFFSQMDDQLLDAICERLVSSLCTEGTYLVREGDLISEMLFIIRGRLESSTTNGGRTGFFNSI-------------ILRPGDFCGEELLSWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVAN 595          
The following BLAST results are available for this feature:
BLAST of CX294208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CNGC1_ARATH6.417e-2544.70Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH2.439e-2441.35Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNGC8_ARATH4.160e-2440.60Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH4.160e-2441.67Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNG13_ARATH1.210e-2344.36Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC9_ARATH1.581e-2340.91Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC5_ARATH2.064e-2340.15Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNG10_ARATH8.673e-2242.86Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNG15_ARATH7.342e-2139.55Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNG17_ARATH2.136e-2037.78Probable cyclic nucleotide-gated ion channel 17 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05013E10SK AbsAOv1 Citrus clementina cDNA clone C05013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294208 ID=CX294208; Name=CX294208; organism=Citrus clementina; type=EST; length=555bp
GCTGGAATCTGCTAAAGAAAGTACAAGGGTTCAGGAAGCTAAATGAAGTA
ACATTGGATGCTCTATGCGATTGCGTAAAACCAACTTTCTTCACCGAGCA
CACTCACTTGATTCGTGAAGGAGACCCAATTGACGAGATGATCTTTGTAG
TGCAAGGCAAACTGCGCACCTACACCTTTAAGGATATACAAAGTGGCTCA
ACAAGCTCTGATCATAAAAGATATGATGGCAAAAACACAAGGAAAGAAGA
TCTTCTGCAAGATGGCGACTTCTATGGAGAAGAACTTATTGACTGGGCTT
TGAGAGACCGCTTCTCATTTGACATCCCTAAGTCAAACAGAACCATTCAA
GCACTTACAAATGTTGATGCCTTTATGCTTATGGCTGATGACTTGAAAAT
TGTATTCAATGACATGATGAATCAGTTAGGTCTCTACGACTAAGGTCTCT
ATGACTAACAAGAACTCGTGGAACTCTACCCAGGAAATTGAGTGGGACTT
GCAGCTGAGGTTTATCCACTCTTCAGCACTAAATCTTTTAATGAATAGTA
CTTTT
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