CX294309

Overview
NameCX294309
Unique NameCX294309
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294309_ssr13 microsatellite CX294309_ssr13:13..32. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12170 contig Ccv1_Contig12170:31..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.352e-78
Identity = 138/160 (86.25%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTGKY GDG  D+QLERI+VYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 160          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB1_ARATH (Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 3.934e-78
Identity = 139/160 (86.88%), Postives = 142/160 (88.75%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTG+Y GD   DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 159          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 5.681e-77
Identity = 137/161 (85.09%), Postives = 142/161 (88.20%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G   E DLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDN VFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISK+RE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREE 161          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 5.681e-77
Identity = 137/161 (85.09%), Postives = 142/161 (88.20%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE-DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTG+Y+G   E DLQLERINVY+NEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDN VFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISK+RE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGRYKGTAAESDLQLERINVYFNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNLVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKVREE 161          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB5_ARATH (Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.653e-76
Identity = 137/160 (85.62%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIGSKFWEVICDEHG+D TG+Y GD   DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 159          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 2.159e-76
Identity = 136/160 (85.00%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDS--DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 3.682e-76
Identity = 136/160 (85.00%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVICDEHGVD TGKY GD   DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGDS--DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 6.281e-76
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   DLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGDS--DLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 6.281e-76
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVICDEHG+D TGKY GD   +LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDS--ELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
BLAST of CX294309 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 282.722 bits (722), Expect = 8.203e-76
Identity = 135/160 (84.38%), Postives = 141/160 (88.12%), Query Frame = 1
Query:   79 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIRED 558
            MREILHIQGGQCGNQIG+KFWEVICDEHGVD TG+Y GD   DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLDVVRKEAENCDCLQGFQVCH              ISKIRE+
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDS--DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE 158          
The following BLAST results are available for this feature:
BLAST of CX294309 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB6_GOSHI1.352e-7886.25Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB1_ARATH3.934e-7886.88Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_SOLTU5.681e-7785.09Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU5.681e-7785.09Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB5_ARATH1.653e-7685.63Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB3_ORYSJ2.159e-7685.00Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_GOSHI3.682e-7685.00Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB3_WHEAT6.281e-7684.38Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB3_SOYBN6.281e-7684.38Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB7_ORYSJ8.203e-7684.38Tubulin beta-7 chain OS=Oryza sativa subsp. japoni... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015A02SK FlavSen1 Citrus clementina cDNA clone C05015A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294309 ID=CX294309; Name=CX294309; organism=Citrus clementina; type=EST; length=558bp
TCAGATCACATCCTCTCTCTCTCTCTCTCTCTAAATCTTCAATTCATTTT
CTCTTCGTTTCCTTTCCGTTTGAGATAAATGAGAGAGATCTTGCACATTC
AAGGAGGCCAATGCGGCAACCAAATCGGCTCCAAATTCTGGGAAGTCATT
TGCGACGAGCATGGCGTGGACCCCACGGGGAAGTATAGAGGTGACGGCGT
TGAGGATCTTCAACTGGAGCGAATCAATGTCTATTACAACGAAGCTTCCG
GTGGAAGGTACGTGCCTCGAGCTGTTCTCATGGATCTTGAACCCGGTACC
ATGGATAGTATCAGATCCGGCCCGTACGGCCAGATCTTTCGACCTGATAA
CTTCGTTTTTGGACAATCCGGTGCGGGCAATAACTGGGCCAAAGGTCATT
ATACTGAAGGCGCCGAATTGATCGACGCTGTTCTTGACGTCGTTCGTAAG
GAGGCAGAGAACTGTGATTGCTTGCAAGGCTTTCAGGTGTGCCACTCACT
GGGAGGAGGTACAGGTTCTGGCATGGGAACTCTCTTGATATCAAAGATTA
GAGAGGAT
back to top