CX294315

Overview
NameCX294315
Unique NameCX294315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX294315_ssr23 microsatellite CX294315_ssr23:23..34. BLAST: Citrus ESTs to TAIR9
Ccv1_Contig11842 contig Ccv1_Contig11842:756..1357. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_VITVI (ATP synthase subunit c, chloroplastic OS=Vitis vinifera GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_TRACE (ATP synthase subunit c, chloroplastic OS=Trachelium caeruleum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_TOBAC (ATP synthase subunit c, chloroplastic OS=Nicotiana tabacum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SOLTU (ATP synthase subunit c, chloroplastic OS=Solanum tuberosum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_SOLLC (ATP synthase subunit c, chloroplastic OS=Solanum lycopersicum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_RANMC (ATP synthase subunit c, chloroplastic OS=Ranunculus macranthus GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_PSINU (ATP synthase subunit c, chloroplastic OS=Psilotum nudum GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_POPTR (ATP synthase subunit c, chloroplastic OS=Populus trichocarpa GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_POPAL (ATP synthase subunit c, chloroplastic OS=Populus alba GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
BLAST of CX294315 vs. ExPASy Swiss-Prot
Match: ATPH_PLAOC (ATP synthase subunit c, chloroplastic OS=Platanus occidentalis GN=atpH PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.011e-16
Identity = 49/67 (73.13%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  320 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTFMG 520
            MNPLISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALT  G
Sbjct:    1 MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYG 67          

HSP 2 Score: 20.4014 bits (41), Expect = 1.011e-16
Identity = 9/14 (64.29%), Postives = 10/14 (71.43%), Query Frame = 1
Query:  493 FYGSFNIYGLVVAL 534
            F  +  IYGLVVAL
Sbjct:   59 FMEALTIYGLVVAL 72          
The following BLAST results are available for this feature:
BLAST of CX294315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_VITVI1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Vitis vin... [more]
ATPH_TRACE1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Tracheliu... [more]
ATPH_TOBAC1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Nicotiana... [more]
ATPH_SOLTU1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Solanum t... [more]
ATPH_SOLLC1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Solanum l... [more]
ATPH_RANMC1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Ranunculu... [more]
ATPH_PSINU1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Psilotum ... [more]
ATPH_POPTR1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Populus t... [more]
ATPH_POPAL1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Populus a... [more]
ATPH_PLAOC1.011e-1673.13ATP synthase subunit c, chloroplastic OS=Platanus ... [more]

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Properties
Property NameValue
Genbank descriptionC05015A11SK FlavSen1 Citrus clementina cDNA clone C05015A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294315 ID=CX294315; Name=CX294315; organism=Citrus clementina; type=EST; length=601bp
GAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATTCA
AAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATTTA
CAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATCTA
AAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGAGT
TCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTCAT
AATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTATT
TTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGTTA
TTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTGGT
CAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCCGA
GGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTATGG
AAGCTTTAACATTTATGGGCTGGTTGTAGCATTGCACTTTTTTTGCGATC
CTTTGTTTATCTAGAATAGGAGGGCATTACATTACTATTTTTTTCCTATT
T
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