CX294318

Overview
NameCX294318
Unique NameCX294318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9828 contig Ccv1_Contig9828:5..630. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.717e-60
Identity = 117/139 (84.17%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            MS+RKT+EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.634e-60
Identity = 121/139 (87.05%), Postives = 124/139 (89.21%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            MSRRKTREPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.905e-60
Identity = 119/137 (86.86%), Postives = 124/137 (90.51%), Query Frame = 1
Query:   73 RRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            R+KTREPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.300e-59
Identity = 116/139 (83.45%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            MS+RKT+EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.740e-59
Identity = 118/139 (84.89%), Postives = 121/139 (87.05%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.141e-58
Identity = 115/139 (82.73%), Postives = 123/139 (88.49%), Query Frame = 1
Query:   67 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            MS+RKT+EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 6.481e-54
Identity = 107/135 (79.26%), Postives = 116/135 (85.93%), Query Frame = 1
Query:   79 KTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+Q+CKELGITALHIKLRA            AQSALRALAR+GMKIGRIEDVTPIPTDST
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDST 142          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.886e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   67 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.886e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   67 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
BLAST of CX294318 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.886e-53
Identity = 108/140 (77.14%), Postives = 119/140 (85.00%), Query Frame = 1
Query:   67 MSRRKTREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 483
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140          
The following BLAST results are available for this feature:
BLAST of CX294318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
RS143_ARATH2.717e-6084.1740S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE4.634e-6087.0540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE7.905e-6086.8640S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_ARATH2.300e-5983.4540S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS14_LUPLU8.740e-5984.8940S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_ARATH1.141e-5882.7340S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE6.481e-5479.2640S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_MOUSE1.886e-5377.1440S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN1.886e-5377.1440S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR1.886e-5377.1440S ribosomal protein S14 OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05015B02SK FlavSen1 Citrus clementina cDNA clone C05015B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294318 ID=CX294318; Name=CX294318; organism=Citrus clementina; type=EST; length=624bp
GGCTGCAGGGCTGCTGCTTCTGTATTTCGAGGCTTTTGTGATCAACTCTC
CGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAAGGAGG
AAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTATTTGGC
GTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTGACTGA
CTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAAGGTTA
AAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAGCACAA
GATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCATATTAA
GCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGGTGCTC
AGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCCGCATA
GAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGTGGTAG
AAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCTCCATAACGTTCAG
ATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTAGATGCAGAGTT
ATTTCCCATTTTGTTGTTGGATGT
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