CX294319

Overview
NameCX294319
Unique NameCX294319
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11147 contig Ccv1_Contig11147:28..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.493e-36
Identity = 87/178 (48.88%), Postives = 100/178 (56.18%), Query Frame = 1
Query:   49 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            AF N+NS +GLKKLDE+LLTRSYITGYQASKDDITV++ALSK P+SE+VNVSRW+ HIDALLRI               +P+                           LFG                              VL+D+KPWDDETDMKKLEEAVRS+QMEGL  GASKL
Sbjct:    3 AFPNLNSGSGLKKLDEHLLTRSYITGYQASKDDITVFTALSKPPTSEFVNVSRWFNHIDALLRISGVSAEGSGVIVEGSSPITEEAVATPPAADSKDTAAEEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKL 180          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.674e-36
Identity = 86/178 (48.31%), Postives = 98/178 (55.06%), Query Frame = 1
Query:   49 AFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPV------ATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            AF N+NS  GLKKLDE+LLTRSYITGYQASKDDITV++AL+K P+S+YVN SRWY HIDALLRI               AP+                           LFG                              VL+D+KPWDDETDMKKLEEAV+S+QMEGL  GASKL
Sbjct:    3 AFPNLNSDAGLKKLDEHLLTRSYITGYQASKDDITVFAALAKPPTSQYVNASRWYNHIDALLRISGVSAEGSGVIVEGSAPITEEAVATPPAADSKDAAADEEDDDDVDLFGEETEEEKKAAEERAASVKASTKKKESGKSSVLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKL 180          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.113e-34
Identity = 88/178 (49.44%), Postives = 98/178 (55.06%), Query Frame = 1
Query:   40 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXA-PVAT--XXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            MAV+F NV+S  GLKKLDEYLLTRSYI+GYQAS DD+ VYSA S APSS Y NV+RW+ HIDALLR+               A P A+                     LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLL GASKL
Sbjct:    1 MAVSFTNVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTADGQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKL 178          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 5.310e-34
Identity = 81/175 (46.29%), Postives = 98/175 (56.00%), Query Frame = 1
Query:   40 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            MAV F +++S  GL+KLDEYLL+RSYI+GYQASKDD+ V++AL+K PSS+YVNVSRWY H++ALLRI               +                       LFG                              VLLDVKPWDDETDM KLEEAVRS++M+GLL GASKL
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEALLRISGVSAEGCGVTVEGSSVATPPVADTKASAAEDDDDDDVDLFGEETEEEKKASEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKL 175          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 9.058e-34
Identity = 82/175 (46.86%), Postives = 95/175 (54.29%), Query Frame = 1
Query:   40 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAPVATXXXXXXXXXXXXXXXXXXXLFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            MA+   NVNS  GL+KLDEYLLTRSYI+GYQASKDD+TV+++L  AP++ YVNV+RWY HI ALLR                A   +                   LFG                              VLLDVKPWDDETDM KLEEAVR+V+MEGLL GASKL
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAEGEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKL 175          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.308e-32
Identity = 89/180 (49.44%), Postives = 97/180 (53.89%), Query Frame = 1
Query:   40 MAVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALLRIXXXXXXXXXXXXXXXAP---VAT-XXXXXXXXXXXXXXXXXXXLFG-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            MAV F +++S  GL  LD YLL+RSYITGYQASKDD+TV+SA+ KA  + YVNVSRWYKHIDALLRI               AP   VAT                    LFG                               VLLDVKPWDDETDMKKLEEAVRSVQ EGL  GASKL
Sbjct:    1 MAVTFSDLSSPAGLDSLDAYLLSRSYITGYQASKDDLTVFSAVPKASLASYVNVSRWYKHIDALLRISGVSGEGSGVTVEGNAPASDVATPPAADSKASAADDDDDDDVDLFGEETEEEKKAAEERAAAAAAKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKL 180          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:   46 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHI 222
            +AF +V +  GLK+L+ +L   SYI+GY  SK D++V+ AL KAPS++ VNV+RWY+HI
Sbjct:    1 MAFGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHI 59          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  457 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            VLLDVKPWDDETDMKKLEEAVRSVQMEGL  GASKL
Sbjct:  138 VLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKL 173          
BLAST of CX294319 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.703e-11
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1
Query:  457 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLCGASKL 564
            VL+D+KPWDDETDMKKLEEAVRSVQMEGL  GASKL
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKL 167          
The following BLAST results are available for this feature:
BLAST of CX294319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
EF1D2_ARATH1.493e-3648.88Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH5.674e-3648.31Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1D1_ORYSJ3.113e-3449.44Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR5.310e-3446.29Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D2_ORYSJ9.058e-3446.86Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1D_BETVU1.308e-3249.44Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1B_DROME9.746e-1252.54Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B_ORYSJ1.662e-1194.44Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1B_WHEAT3.703e-1188.89Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]
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Properties
Property NameValue
Genbank descriptionC05015B05SK FlavSen1 Citrus clementina cDNA clone C05015B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294319 ID=CX294319; Name=CX294319; organism=Citrus clementina; type=EST; length=601bp
GCTAATCTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCGTCGC
ATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAATACC
TTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGATATC
ACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCAATGT
GTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGCGTTA
CTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGCTACT
CCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACGATGA
TGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCCGAGG
CACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGGCAAG
TCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACATGAA
GAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTCTGTG
GAGCCAGCAAACTGCACCTGTTGATATGTATCAGAATTGCAATATGCTTA
C
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