CX294322

Overview
NameCX294322
Unique NameCX294322
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14207 contig Ccv1_Contig14207:739..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX3_ARATH (Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.266e-28
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDQNGVKMGLQ 303
            KLDISLGVALGSATQI++FVVPL VI++WI+GI MDLNFN+LET S            QDGTSHYMKG VLLLCY +I ACFFV   P     N + +GLQ
Sbjct:  351 KLDISLGVALGSATQISLFVVPLSVIVAWILGIKMDLNFNILETSSLALAIIITAFTLQDGTSHYMKGLVLLLCYVIIAACFFVDQIP---QPNDLDVGLQ 448          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX1A_ORYSJ (Vacuolar cation/proton exchanger 1a OS=Oryza sativa subsp. japonica GN=CAX1a PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.960e-28
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPL-DSDQNGVKMGLQSSTGTVLRA 330
            KLDI+LGVALGSATQI++FVVPL V+++WIMG+ MDL+F LLETGS            QDGTSHY+KG +LLLCY VIGACFFV+ +P   ++ NG  + + + + +V  A
Sbjct:  341 KLDITLGVALGSATQISMFVVPLSVLVAWIMGVQMDLDFKLLETGSLFMAVLVTAFTLQDGTSHYLKGILLLLCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSVQAA 451          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX1_ARATH (Vacuolar cation/proton exchanger 1 OS=Arabidopsis thaliana GN=CAX1 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 8.612e-28
Identity = 62/107 (57.94%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDQNGVKMGLQSSTGTV 321
            KLDISLGVALGSATQI +FVVPL +I++WI+GI MDLNF  LETG             QDG+SHYMKG VLLLCYF+I  CFFV   P    QN + +G Q+    V
Sbjct:  349 KLDISLGVALGSATQIGLFVVPLTIIVAWILGINMDLNFGPLETGCLAVSIIITAFTLQDGSSHYMKGLVLLLCYFIIAICFFVDKLP--QKQNAIHLGHQAMNNVV 453          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX4_ARATH (Vacuolar cation/proton exchanger 4 OS=Arabidopsis thaliana GN=CAX4 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 4.274e-27
Identity = 59/88 (67.05%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 264
            KLDI+LG+ALGSATQIA+FVVP+ V+++W MGI MDLNFNLLET              QDGTS+YMKG VLLLCY VI ACFFVSN P
Sbjct:  353 KLDITLGIALGSATQIALFVVPVTVLVAWTMGIEMDLNFNLLETACFALSILVTSLVLQDGTSNYMKGLVLLLCYVVIAACFFVSNSP 440          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX1B_ORYSJ (Vacuolar cation/proton exchanger 1b OS=Oryza sativa subsp. japonica GN=CAX1b PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.593e-24
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDQNGV 288
            K+DI+LGV+LGSATQI++FVVP+ VI++W MGI MDL+FNLLETGS            Q+G SHY+KG +L+LCY VI  CFFV  R      +GV
Sbjct:  351 KMDITLGVSLGSATQISMFVVPVSVIVAWTMGIPMDLDFNLLETGSLFLAILVTAFTLQEGESHYLKGLILVLCYAVISVCFFVIRRRSAGGTDGV 446          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.407e-22
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSDQN 282
            KLDI+LGVA+GS+TQI++FV+P CV+I WIMG  MDLNF L ET +            Q+GTS+Y KG +L+LCY ++ A FFV   P DS  N
Sbjct:  344 KLDITLGVAIGSSTQISMFVIPFCVVIGWIMGQQMDLNFQLFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDP-DSSNN 436          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 7.061e-22
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSD 276
            KLDI+LGVA+GS+TQI++FV+P CV+I W+MG  MDLNF L ET +            QDG ++Y+KG +L+LCY ++ A FFV   P  SD
Sbjct:  325 KLDITLGVAIGSSTQISMFVIPFCVVIGWMMGQKMDLNFQLFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVDPQSSD 416          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.505e-21
Identity = 46/92 (50.00%), Postives = 60/92 (65.22%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRPLDSD 276
            KLD+SLGVA+GS+ QI++F VP CV+I W+MG  MDLNF L ET +            Q+GTS+Y KG +L+LCY ++ A FFV   P   D
Sbjct:  349 KLDLSLGVAIGSSIQISMFAVPFCVVIGWMMGAQMDLNFQLFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPHQDD 440          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.609e-20
Identity = 44/88 (50.00%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 264
            KLD+SLGVA+GS+ QI++F VP CV+I W+MG  MDLNF L ET              Q+G+S+Y KG +L+LCY ++ A FFV   P
Sbjct:  349 KLDLSLGVAIGSSIQISMFAVPFCVVIGWMMGQQMDLNFQLFETAMLFITVIVVAFFLQEGSSNYFKGLMLILCYLIVAASFFVHEDP 436          
BLAST of CX294322 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.280e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 1
Query:    1 KLDISLGVALGSATQIAVFVVPLCVIISWIMGITMDLNFNLLETGSXXXXXXXXXXXXQDGTSHYMKGFVLLLCYFVIGACFFVSNRP 264
            KLDISLGVA+GS+ QI++F +P CV++ W+MG  MDLNF+L ET S            QDGTS+ +KG +L LCY ++ A F+V   P
Sbjct:  349 KLDISLGVAIGSSIQISMFGIPFCVVMGWMMGKPMDLNFHLFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADP 436          
The following BLAST results are available for this feature:
BLAST of CX294322 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CAX3_ARATH2.266e-2863.37Vacuolar cation/proton exchanger 3 OS=Arabidopsis ... [more]
CAX1A_ORYSJ2.960e-2855.86Vacuolar cation/proton exchanger 1a OS=Oryza sativ... [more]
CAX1_ARATH8.612e-2857.94Vacuolar cation/proton exchanger 1 OS=Arabidopsis ... [more]
CAX4_ARATH4.274e-2767.05Vacuolar cation/proton exchanger 4 OS=Arabidopsis ... [more]
CAX1B_ORYSJ2.593e-2456.25Vacuolar cation/proton exchanger 1b OS=Oryza sativ... [more]
CAX2_ORYSJ5.407e-2253.19Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX3_ORYSJ7.061e-2251.09Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX5_ARATH3.505e-2150.00Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ARATH6.609e-2050.00Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX4_ORYSJ3.280e-1950.00Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC05015B09SK FlavSen1 Citrus clementina cDNA clone C05015B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294322 ID=CX294322; Name=CX294322; organism=Citrus clementina; type=EST; length=508bp
AAGTTGGACATTTCACTGGGTGTTGCGTTGGGTTCTGCAACTCAAATTGC
CGTATTTGTGGTTCCATTGTGCGTGATTATTTCTTGGATTATGGGGATTA
CAATGGATCTTAACTTCAATCTCCTTGAGACTGGCTCTCTTGCTCTAGCA
ATTATTGCCACAGCCTTCACTCTACAGGATGGAACTTCTCATTACATGAA
AGGATTTGTTCTTCTGCTATGCTACTTTGTTATTGGAGCATGCTTTTTTG
TATCCAACAGACCACTCGACTCCGACCAGAATGGGGTCAAAATGGGCCTT
CAATCATCAACTGGAACAGTCCTCAGAGCATGATAAGACTAATTGGGCCT
TCTGGGGTCAGACTCTTCAATTCGTCATTGAAACTTTCAAATATAAGGTG
CATTGCTAATTCTTTCATTTGGCGTCGCCAGCTGGAATTTAGAAGCCGGG
CATAGCATTTTACATGTCGAGAAAGTTTCCATGGATGCCTTCTCATTTGA
GATGAACA
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