CX294343

Overview
NameCX294343
Unique NameCX294343
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12304 contig Ccv1_Contig12304:12..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.686e-52
Identity = 104/144 (72.22%), Postives = 113/144 (78.47%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 465
            MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQN 144          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.998e-50
Identity = 99/144 (68.75%), Postives = 112/144 (77.78%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 465
            MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+M++
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMEN 144          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 8.106e-47
Identity = 94/144 (65.28%), Postives = 107/144 (74.31%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 465
            MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                           TKFT  D+MQ+
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQN 144          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.647e-39
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.763e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.763e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.763e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.763e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 6.221e-39
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107          
BLAST of CX294343 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.605e-37
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 1
Query:   34 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 351
            MK  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CX294343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RL261_ARATH1.686e-5272.2260S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH5.998e-5068.7560S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA8.106e-4765.2860S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN3.647e-3974.7760S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE4.763e-3973.8360S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA4.763e-3973.8360S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN4.763e-3973.8360S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN4.763e-3973.8360S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT6.221e-3973.8360S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME7.605e-3771.9660S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionC05015E01SK FlavSen1 Citrus clementina cDNA clone C05015E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294343 ID=CX294343; Name=CX294343; organism=Citrus clementina; type=EST; length=563bp
GTAAAACCCTAGGCCCAGTCCTCCACATCCACCATGAAGTACAACCCCAG
GGTGTCATCCTCTCGCCGTAAGAACCGGAAGGCGCACTTCACCGCCCCTT
CCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACTGACCTCCGT
CAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGACGAGGTCCA
GGTTGTCCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGTTCAAGTGT
ATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTT
AATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTCGTGATCAC
CAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCA
AGGGACGTGCCGCCGCTGACAAGGAGAAGGGTACCAAGTTCACCCCAGAG
GATATTATGCAGAGTGTTGACTAATTTTTATAAGAGGTTGTTTTTAAAGT
TTTTGTTTATCATAGATTTTATGGATTTAGGATGTTTTGTTTTGGCATGT
CACTAAGAATTTC
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