CX294348

Overview
NameCX294348
Unique NameCX294348
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length554
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: ST7R_ARATH (7-dehydrocholesterol reductase OS=Arabidopsis thaliana GN=DWF5 PE=1 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 8.494e-94
Identity = 155/175 (88.57%), Postives = 166/175 (94.86%), Query Frame = 3
Query:   15 GIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLL 539
            GIFNP IVYDHLGEI+SALIFGSFIFC+ LYIKGH+APSS+DSGSCGN+IIDFYWGMELYPRIGK+FDIKVFTNCRFGMMSWAVLAVTYCIKQYE N KV DSMLVNTILML+YVTKFF WEAGYW+TMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPV LGTQ++  +L
Sbjct:  124 GIFNPAIVYDHLGEIFSALIFGSFIFCVLLYIKGHVAPSSSDSGSCGNLIIDFYWGMELYPRIGKSFDIKVFTNCRFGMMSWAVLAVTYCIKQYEINGKVSDSMLVNTILMLVYVTKFFWWEAGYWNTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVELGTQLAIYIL 298          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_RAT (7-dehydrocholesterol reductase OS=Rattus norvegicus GN=Dhcr7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.335e-30
Identity = 70/168 (41.67%), Postives = 102/168 (60.71%), Query Frame = 3
Query:   21 FNPTIVYDH-LGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGT 518
            F+PTI++D+ +  ++ A I G +    F  IKG+L P+S  D    GN   ++  G+E  PRIGK FD K+F N R G+++W ++ +++  KQ E    V +SM++  +L  IYV  FF  E  Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV HPV L T
Sbjct:  164 FSPTIIFDNWIPLLWCANILG-YAVSTFAMIKGYLFPTSAEDCKFTGNFFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQQELYGHVTNSMILVNVLQAIYVLDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLST 330          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_MOUSE (7-dehydrocholesterol reductase OS=Mus musculus GN=Dhcr7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.335e-30
Identity = 70/168 (41.67%), Postives = 102/168 (60.71%), Query Frame = 3
Query:   21 FNPTIVYDH-LGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGT 518
            F+PTI++D+ +  ++ A I G +    F  IKG+L P+S  D    GN   ++  G+E  PRIGK FD K+F N R G+++W ++ +++  KQ E    V +SM++  +L  IYV  FF  E  Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV HPV L T
Sbjct:  164 FSPTIIFDNWIPLLWCANILG-YAVSTFAMIKGYLFPTSAEDCKFTGNFFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQQELYGHVTNSMILVNVLQAIYVLDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLST 330          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_BOVIN (7-dehydrocholesterol reductase OS=Bos taurus GN=DHCR7 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.744e-30
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = 3
Query:   15 GIFNPTIVYDH-LGEIYSALIFGSFIFCIFLYIKGHLAPSSTDSGSC---GNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGT 518
            G F+PTI++D+ +  ++ A I G +    F  +KG+L P  TD+  C   GN   ++  G+E  PRIGK FD K+F N R G+++W ++ +++  KQ E    V +SM++  IL  IYV  FF  E  Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV HPV L T
Sbjct:  166 GWFSPTIIFDNWIPLLWCANILG-YTVSTFAMVKGYLFP--TDARECKFTGNFFYNYMMGVEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQQELYGHVTNSMVLVNILQAIYVLDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLPT 334          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_HUMAN (7-dehydrocholesterol reductase OS=Homo sapiens GN=DHCR7 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.625e-30
Identity = 67/168 (39.88%), Postives = 103/168 (61.31%), Query Frame = 3
Query:   21 FNPTIVYDH-LGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGT 518
            F+PTI++D+ +  ++ A I G +    F  +KG+  P+S  D    GN   ++  G+E  PRIGK FD K+F N R G+++W ++ +++  KQ E ++ V ++M++  +L  IYV  FF  E  Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV HPV L T
Sbjct:  168 FSPTIIFDNWIPLLWCANILG-YAVSTFAMVKGYFFPTSARDCKFTGNFFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSFAAKQRELHSHVTNAMVLVNVLQAIYVIDFFWNETWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYHPVQLST 334          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_XENLA (7-dehydrocholesterol reductase OS=Xenopus laevis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.928e-29
Identity = 68/177 (38.42%), Postives = 105/177 (59.32%), Query Frame = 3
Query:   21 FNPTIVYDH-LGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            F+PTIV D+ +  ++ A + G +    F  +K +  P++  D    GN   D+  G+E  PRIGK FD K+F N R G+++W ++ ++Y  KQ E   +V +SM++  +L  IYV  FF  E+ Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV +PV L T  +  +L +
Sbjct:  166 FSPTIVIDNWIPLLWCANLLG-YSVATFALVKANFFPTNANDCKFTGNFFYDYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSYAAKQQELYGQVTNSMILVNVLQAIYVVDFFWNESWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYNPVELSTTAAVAVLLL 341          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_DANRE (7-dehydrocholesterol reductase OS=Danio rerio GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.294e-29
Identity = 65/176 (36.93%), Postives = 103/176 (58.52%), Query Frame = 3
Query:   21 FNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            F+PTI+ D+   +        +    F +IK +L P++  D    GN+  ++  G+E  PRIGK FD K+F N R G+++W ++ ++Y  KQ E    V +SM++  +L  +YV  FF  EA Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV +P+ L T  ++ +L +
Sbjct:  171 FSPTIIIDNWIPLLWCTNILGYAVSTFAFIKAYLFPTNPEDCKFTGNMFYNYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSYAAKQQELYGYVTNSMILVNVLQAVYVVDFFWNEAWYLKTIDICHDHFGWYLGWGDCVWLPFLYTLQGLYLVYNPIQLSTPHAAGVLIL 346          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_XENTR (7-dehydrocholesterol reductase OS=Xenopus tropicalis GN=dhcr7 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 7.325e-29
Identity = 65/176 (36.93%), Postives = 100/176 (56.82%), Query Frame = 3
Query:   21 FNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSST-DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLLFV 545
            F+PTI+ D+   +        +    F  +K +  P++  D    GN   D+  G+E  PRIGK FD K+F N R G+++W ++ ++Y  KQ E   +V +SM++  +L  IYV  FF  E+ Y  T+DI HD  G+Y+ WG  VW+P +YT  G+YLV +PV L T  +  +L +
Sbjct:  166 FSPTIIIDNWVPLLWCANLLGYSVATFALLKAYFFPTNAHDCKFTGNFFYDYMMGIEFNPRIGKWFDFKLFFNGRPGIVAWTLINLSYAAKQQELYGQVTNSMILVNVLQAIYVVDFFWNESWYLKTIDICHDHFGWYLGWGDCVWLPYLYTLQGLYLVYNPVELSTATAVGVLLL 341          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: DHCR7_MIMIV (Probable 7-dehydrocholesterol reductase OS=Acanthamoeba polyphaga mimivirus GN=DHCR7 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.430e-24
Identity = 61/169 (36.09%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   15 GIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS-TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTILMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGT 518
            G+F+PTI+ D+ G I+ ++    ++     Y K     S  +D+   G +  D   G+E  P I    D+K+F N R G+++W ++ ++  +KQYE    V +SM++  IL LIY+  FF  E  Y  T+DIAHD  G+ + WG  VW+P  YT    YL+N+P+ L T
Sbjct:  146 GLFSPTIIMDNWGSIFWSVNIIGYLITFLAYFKALTFSSHPSDNKFTGKLFYDIVMGIEFNPEIFGT-DLKLFFNGRPGIIAWNLINLSCAMKQYENFGYVSNSMILVIILQLIYIVDFFYNENWYVHTVDIAHDHFGWMLAWGDTVWLPFGYTLQAGYLMNNPIDLST 313          
BLAST of CX294348 vs. ExPASy Swiss-Prot
Match: LBR_RAT (Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.133e-21
Identity = 58/171 (33.92%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   36 VYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDS-GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVTYCIKQYEANAKVEDSMLVNTI--LMLIYVTKFFLWEAGYWSTMDIAHDRAGFYICWGCLVWVPSVYTSPGMYLVNHPVHLGTQVSSVLL 539
            +Y H  +   A I  S +  ++LY +    P    S  S GN + DF+ G EL PRIG  FD+K F   R G++ W V+ +   + + +   +   S+ +  +    L+YV     +E    +TMDI HD  GF + +G LVWVP  Y+    YLVNHP  L   ++SV++
Sbjct:  327 LYTHFLQFALAAIVFSVVLSVYLYARSLKVPRDELSPASSGNAVYDFFIGRELNPRIGA-FDLKFFCELRPGLIGWVVINLVMLLAEMKVQERSAPSLAMTLVNSFQLLYVVDALWFEEALLTTMDIIHDGFGFMLAFGDLVWVPFTYSLQAFYLVNHPQDLSWPLTSVII 496          
The following BLAST results are available for this feature:
BLAST of CX294348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ST7R_ARATH8.494e-9488.577-dehydrocholesterol reductase OS=Arabidopsis thal... [more]
DHCR7_RAT1.335e-3041.677-dehydrocholesterol reductase OS=Rattus norvegicu... [more]
DHCR7_MOUSE1.335e-3041.677-dehydrocholesterol reductase OS=Mus musculus GN=... [more]
DHCR7_BOVIN1.744e-3041.867-dehydrocholesterol reductase OS=Bos taurus GN=DH... [more]
DHCR7_HUMAN6.625e-3039.887-dehydrocholesterol reductase OS=Homo sapiens GN=... [more]
DHCR7_XENLA1.928e-2938.427-dehydrocholesterol reductase OS=Xenopus laevis G... [more]
DHCR7_DANRE4.294e-2936.937-dehydrocholesterol reductase OS=Danio rerio GN=d... [more]
DHCR7_XENTR7.325e-2936.937-dehydrocholesterol reductase OS=Xenopus tropical... [more]
DHCR7_MIMIV1.430e-2436.09Probable 7-dehydrocholesterol reductase OS=Acantha... [more]
LBR_RAT1.133e-2133.92Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05015E09SK FlavSen1 Citrus clementina cDNA clone C05015E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294348 ID=CX294348; Name=CX294348; organism=Citrus clementina; type=EST; length=554bp
AATTCGGCACGAGGGGAATATTCAACCCCACCATTGTTTATGATCATCTG
GGAGAAATATATTCGGCACTTATTTTTGGAAGCTTCATCTTTTGTATTTT
CTTATATATTAAAGGTCACTTGGCCCCATCTTCCACTGATTCTGGTTCAT
GTGGAAACATAATAATTGACTTCTACTGGGGTATGGAGCTGTATCCTCGA
ATTGGCAAGAACTTTGACATCAAAGTATTCACAAACTGCAGATTTGGGAT
GATGTCTTGGGCTGTTCTCGCTGTCACTTATTGTATTAAGCAGTATGAAG
CAAATGCAAAAGTCGAAGATTCCATGCTTGTAAATACTATATTGATGCTG
ATTTATGTTACAAAATTCTTCTTGTGGGAAGCTGGTTACTGGAGCACAAT
GGACATTGCTCATGATCGAGCTGGGTTTTATATTTGTTGGGGATGCTTGG
TATGGGTTCCTTCTGTGTATACATCTCCTGGCATGTACCTAGTTAACCAT
CCTGTGCATCTTGGCACTCAAGTAAGTAGTGTCCTGTTATTTGTTGTTCA
TCAA
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