CX294355

Overview
NameCX294355
Unique NameCX294355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14989 contig Ccv1_Contig14989:299..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 4.545e-36
Identity = 76/157 (48.41%), Postives = 105/157 (66.88%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS--TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTIEYFDDVKS 475
            SFVRQLNTYGFRK+DP+QWEFANE+FI+GQRH LKNIHRRKP+ SHS  +Q   PLT+ ER ++E +IERLK +N+                E  +Q++ E+L  +E++Q  +I+ +  ++K PGF S+  QQ + H KKRRL  P  I + +D  +
Sbjct:   63 SFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHSSHSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHRKKRRL--PIPISFHEDANT 217          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.143e-33
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQS----PTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQ-QAEVHSKKRRLLRPTTIEYFDD 466
            SF+RQLNTYGFRK DP+QWEFAN++F+RGQ HL+KNIHRRKPVHSHS  +      PLT++ER     +IERL KE                 FE  V+ ++ERL+++E RQ  M++ ++ +L+KPG +  L+    E + +KRR  R   IE+F D
Sbjct:   66 SFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEKPGLALNLSPCVPETNERKRRFPR---IEFFPD 219          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.792e-32
Identity = 67/150 (44.67%), Postives = 98/150 (65.33%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS---TQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHSKKRRLLRPTTI 451
            SF+RQLNTYGFRK+DP++WEF N++F+RG+ +L+KNIHRRKPVHSHS    Q+  PLTE+ER   E +IERLK E                EFE  V ++++RL+++E  Q  ++A ++ +L KPG S  L    E H +++R  +  ++
Sbjct:   64 SFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQNPLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIVAYVSQVLGKPGLSLNL----ENHERRKRRFQENSL 209          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.402e-31
Identity = 73/145 (50.34%), Postives = 96/145 (66.21%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT--PLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPG--FSSALNQQAEVHSKKRRL 433
            SF+RQLNTYGFRKIDP++WEFANE+FIRG  HLLKNIHRRKPVHSHS Q+    PL E+ER E E +I RLK E S             +   + +Q++  RL  +E RQ  ++A L  +L++ G   SS+L  +++  SKKRR+
Sbjct:   71 SFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQINGPLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVASLCEMLQRRGGAVSSSL-LESDHFSKKRRV 214          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 78/171 (45.61%), Postives = 97/171 (56.73%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVHS-------KKRRL-------LRPTTIEYFDDVKSAS 481
            SF+RQLNTYGFRKIDP++WEFANE FI+GQ+HLLKNIHRRKP+HSHS   P  L + ER  FE +IERL +E S                   ++ +  R+  +E RQT+MIA L    K P F + L + AE  S       KKRRL           T  ++DD  S S
Sbjct:   73 SFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSHS-HPPGALPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIAFLQQASKNPQFVNKLVKMAEASSIFTDAFNKKRRLPGLDYSIENTETTSFYDDHSSTS 242          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA2B_ORYSJ (Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.325e-27
Identity = 77/187 (41.18%), Postives = 107/187 (57.22%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHST---QSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVH-------SKKRRLLRPTTIEYFDDVKSASLSVNEQKENPDATSDPSPAL 541
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQRHLLKNI RRKP  SH+    QS  P  E     ++A+I+RLK++                  + +++++ +RL+  E RQ QM+A LA ++K P F   L  Q E+        SKKRR      I+   +V     S + ++E+P A  DP  ++
Sbjct:  103 SFVRQLNTYGFRKVDPDRWEFANENFLRGQRHLLKNIKRRKP-PSHTASNQQSLGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQMMAFLARVMKNPEFLKQLMSQNEMRKELQDAISKKRR----RRIDQGPEVDDVGTSSSIEQESP-ALFDPQESV 283          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA2C_ORYSJ (Heat stress transcription factor A-2c OS=Oryza sativa subsp. japonica GN=HSFA2C PE=2 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.122e-26
Identity = 75/178 (42.13%), Postives = 98/178 (55.06%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHS---HSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAEVH-------SKKRRLLRP-TTIEYFDDVKSASLSVNEQKENP 511
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQRHLLK I RRKP  +      QS T   E     FE +I+RLK++ +                + HV+++ +RLR  E +Q QM+  LA  ++ P F   L QQ E         SKKRR  RP   + ++D       S  EQ ++P
Sbjct:   93 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQRHLLKTIKRRKPPSNAPPSQQQSLTSCLEVGEFGFEEEIDRLKRDKNILITEVVKLRQEQQATKDHVKAMEDRLRAAEQKQVQMMGFLARAMRNPEFFQQLAQQKEKRKELEDAISKKRR--RPIDNVPFYD---PGETSQTEQLDSP 265          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.116e-25
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHS-------TQSPTP-LTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAE-------VHSKKRRL 433
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+HLLK I+RRKP H ++         +P P   E  +   E +IE LK++ +                ++ +Q++ +RL+ +E RQ QM++ LA  +  PGF +   QQ E         +KKRRL
Sbjct:   88 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRL 243          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HSFA5_ARATH (Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPTPLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGFSSALNQQAE-----VHSKKRRL 433
            SF+RQLNTYGFRKIDP++WEF N++FI+ Q+HLLKNIHRRKP+HSHS   P   T+ ER   + ++++L +E +                ++  + + E +  +ENRQ +++  L   ++ P F     ++ E      ++KKRRL
Sbjct:   74 SFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPIHSHS-HPPASSTDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTEHVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRL 218          
BLAST of CX294355 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.714e-25
Identity = 68/175 (38.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:   11 SFVRQLNTYGFRKIDPDQWEFANEEFIRGQRHLLKNIHRRKPVHSHSTQSPT-------PLTETERNEFEAKIERLKKENSXXXXXXXXXXGGNHEFEYHVQSVRERLRYLENRQTQMIACLANLLKKPGF-------SSALNQQAEVHSKKRRLLRPTTIEYFDDVKSASLSVN 493
            SFVRQLNTYGFRK+DPD+WEFANE F+RGQ+ +LK+I RRKP      Q P           E  +   E ++ERL+++ +                E+H+Q+V +++  +E RQ QM++ LA  ++ PGF       S+  NQ     +KKRRL     +E  D + S S  VN
Sbjct:   74 SFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRL----PVE--DQMNSGSHGVN 242          
The following BLAST results are available for this feature:
BLAST of CX294355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
HFA4B_ORYSJ4.545e-3648.41Heat stress transcription factor A-4b OS=Oryza sat... [more]
HFA4A_ARATH6.143e-3347.13Heat stress transcription factor A-4a OS=Arabidops... [more]
HFA4C_ARATH6.792e-3244.67Heat stress transcription factor A-4c OS=Arabidops... [more]
HFA4D_ORYSJ4.402e-3150.34Heat stress transcription factor A-4d OS=Oryza sat... [more]
HSFA5_ORYSJ1.673e-3045.61Heat stress transcription factor A-5 OS=Oryza sati... [more]
HFA2B_ORYSJ1.325e-2741.18Heat stress transcription factor A-2b OS=Oryza sat... [more]
HFA2C_ORYSJ1.122e-2642.13Heat stress transcription factor A-2c OS=Oryza sat... [more]
HSFA1_ORYSJ2.116e-2541.67Heat stress transcription factor A-1 OS=Oryza sati... [more]
HSFA5_ARATH4.714e-2539.04Heat stress transcription factor A-5 OS=Arabidopsi... [more]
HFA1E_ARATH4.714e-2538.86Heat stress transcription factor A-1e OS=Arabidops... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05015F06SK FlavSen1 Citrus clementina cDNA clone C05015F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294355 ID=CX294355; Name=CX294355; organism=Citrus clementina; type=EST; length=546bp
GGCTGCAGGCAGTTTTGTGAGGCAGCTGAATACATATGGATTCAGGAAGA
TTGATCCTGATCAGTGGGAGTTTGCAAATGAGGAATTCATACGAGGACAG
AGGCATCTCTTAAAGAACATTCACAGACGCAAGCCAGTTCACAGCCATTC
CACGCAGTCTCCCACTCCACTAACCGAAACGGAAAGAAATGAATTCGAGG
CCAAAATTGAGAGACTCAAAAAGGAGAATAGCTTACTTCAATTAGAGCTG
CGGAGGCGTGAGGGTGGAAATCACGAGTTTGAGTATCATGTTCAATCAGT
ACGCGAGCGTCTAAGGTACTTGGAAAATCGACAGACGCAAATGATCGCCT
GTTTAGCTAACCTGTTGAAGAAACCGGGATTTTCCTCGGCTCTTAATCAA
CAAGCAGAAGTTCACAGCAAAAAGAGAAGGCTGTTGAGGCCTACGACTAT
TGAATACTTTGATGATGTAAAATCCGCAAGCCTAAGTGTGAATGAACAGA
AAGAGAACCCAGATGCTACTTCTGATCCATCTCCGGCGTTGAATTT
back to top