CX294357

Overview
NameCX294357
Unique NameCX294357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294357 vs. ExPASy Swiss-Prot
Match: SECY_MAIZE (Preprotein translocase subunit secY, chloroplastic OS=Zea mays GN=SECY PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.603e-24
Identity = 57/76 (75.00%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  340 QAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGKTVAEAFR 567
            QAIGQVLYLRPYVNDF              GS FTT+IGERISDLKLGNGTSLLIFTSIISYLPASFG+TVA+AF+
Sbjct:  251 QAIGQVLYLRPYVNDFSTEWVLTSVTLLTLGSVFTTFIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQ 326          
BLAST of CX294357 vs. ExPASy Swiss-Prot
Match: SECY_ORYSJ (Preprotein translocase subunit secY, chloroplastic OS=Oryza sativa subsp. japonica GN=SECY PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 56/76 (73.68%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  340 QAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGKTVAEAFR 567
            QAIGQVL+LRPYVNDF              GS FTT+IGERISDLKLGNGTSLLIFTSIISYLPASFG+TVA+AF+
Sbjct:  254 QAIGQVLFLRPYVNDFSTEWVLTSVTLLTLGSVFTTFIGERISDLKLGNGTSLLIFTSIISYLPASFGRTVAQAFQ 329          
BLAST of CX294357 vs. ExPASy Swiss-Prot
Match: SECY_SPIOL (Preprotein translocase subunit secY, chloroplastic OS=Spinacia oleracea GN=SECY PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.204e-23
Identity = 54/76 (71.05%), Postives = 61/76 (80.26%), Query Frame = 1
Query:  340 QAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGKTVAEAFR 567
            QAIGQVL+LRPYVND+              GS FTTY+GERISDLKLGNGTSLLIFT+IISYLPASFG+TVAEA++
Sbjct:  246 QAIGQVLFLRPYVNDYSTEWVLSSVILLTLGSVFTTYLGERISDLKLGNGTSLLIFTNIISYLPASFGRTVAEAYQ 321          
BLAST of CX294357 vs. ExPASy Swiss-Prot
Match: SECY_ARATH (Preprotein translocase subunit secY, chloroplastic OS=Arabidopsis thaliana GN=SECY PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 55/76 (72.37%), Postives = 57/76 (75.00%), Query Frame = 1
Query:  340 QAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGKTVAEAFR 567
            QAIGQV YLRPYVNDF              GS  TTYIGERISDLKLGNGTSLLIFTSIISYLPASFG+T AEA +
Sbjct:  249 QAIGQVFYLRPYVNDFSTEWVVSSVTLLTLGSVLTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGRTTAEALQ 324          
BLAST of CX294357 vs. ExPASy Swiss-Prot
Match: SECY_PEA (Preprotein translocase subunit secY, chloroplastic OS=Pisum sativum GN=SECY PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.518e-21
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 1
Query:  340 QAIGQVLYLRPYVNDFXXXXXXXXXXXXXXGSAFTTYIGERISDLKLGNGTSLLIFTSIISYLPASFGKTVAEAF 564
            QAIGQVL+LRPY NDF              GS FTTYIGE+I++LKLGNGTSLLIFT+IISYLPASFG+T ++AF
Sbjct:  227 QAIGQVLFLRPYANDFTTEWALTSVILLTLGSVFTTYIGEQITELKLGNGTSLLIFTNIISYLPASFGRTFSQAF 301          
The following BLAST results are available for this feature:
BLAST of CX294357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SECY_MAIZE2.603e-2475.00Preprotein translocase subunit secY, chloroplastic... [more]
SECY_ORYSJ7.574e-2473.68Preprotein translocase subunit secY, chloroplastic... [more]
SECY_SPIOL2.204e-2371.05Preprotein translocase subunit secY, chloroplastic... [more]
SECY_ARATH8.375e-2372.37Preprotein translocase subunit secY, chloroplastic... [more]
SECY_PEA3.518e-2166.67Preprotein translocase subunit secY, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionC05015F08SK FlavSen1 Citrus clementina cDNA clone C05015F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294357 ID=CX294357; Name=CX294357; organism=Citrus clementina; type=EST; length=567bp
TTCGGCACGAGGATTTAGTTACTGATGTTTGTCTTTCTATAGAACTGAAT
GGAACTGTTTTGATTTAGTGTGGATTCACGCTACATGATATGCAGGGAGT
GTTTCTTTCAATCACGTATAGAGAATAAAAGTTGTGTACATGAAGGTTGA
CTTTGTGCAAGCTCCTTTTCAACTGTCAAATACTGGGCTATAGTGCATTG
CTATAGTGCTGTACAGTTCATATAACATGGGAGGATGTTAGACTGTGGAC
TGACTGTCCTACAACTTCTGGAAATTACATCAAATGGTTTCCAAATAAGC
CGCTGAGCTTGGCAAATAATAAATGTTTATTTGTGATGACAGGCTATTGG
TCAAGTCCTTTATCTTCGTCCCTATGTCAATGACTTCAGTACGGATTGGG
TTCTGACATCTGTTACTTTATTGACACTTGGCTCTGCATTCACTACATAC
ATTGGGGAAAGGATCTCTGATCTAAAACTTGGAAACGGCACGTCTCTTTT
GATATTCACGAGCATTATCTCCTACTTGCCAGCATCATTTGGTAAGACTG
TCGCTGAGGCATTCAGG
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