CX294362

Overview
NameCX294362
Unique NameCX294362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14622 contig Ccv1_Contig14622:214..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.345e-19
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.680e-19
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.264e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE
Sbjct:   47 VKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 44/45 (97.78%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTE
Sbjct:   47 VKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.157e-18
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.312e-17
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 137
            VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:   47 VKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.179e-14
Identity = 35/45 (77.78%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   47 MKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.653e-13
Identity = 34/45 (75.56%), Postives = 38/45 (84.44%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:   47 MKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 31/45 (68.89%), Postives = 33/45 (73.33%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            VKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E
Sbjct:   47 VKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAE 91          
BLAST of CX294362 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.429e-11
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 3
Query:    3 VKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 137
            +KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  E
Sbjct:   47 MKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKE 91          
The following BLAST results are available for this feature:
BLAST of CX294362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RL37A_ORYSJ4.345e-1997.7860S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ9.680e-1997.7860S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH1.264e-1895.56Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
RL37A_GOSHI2.157e-1897.7860S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
R37A2_ARATH2.157e-1895.5660S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA5.312e-1793.4860S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU7.179e-1477.7860S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA4.653e-1375.5660S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL43_ASHGO7.429e-1168.8960S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_CRYST7.429e-1166.6760S ribosomal protein L37a OS=Cryptochiton steller... [more]
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Properties
Property NameValue
Genbank descriptionC05015G03SK FlavSen1 Citrus clementina cDNA clone C05015G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294362 ID=CX294362; Name=CX294362; organism=Citrus clementina; type=EST; length=397bp
GTGTGAAGAGGAAGGCTGTGGGAATCTGGGGTTGCAAAGACTGTGGCAAG
GTGAAAGCTGGAGGTGCTTACACTTTGAATACTGCTAGTGCTGTGACCGT
GAGGAGTACAATTCGGAGGCTGAGGGAACAGACCGAGAGTTAATTTTGTT
GCCAATCTATCTTTTTTTTCATTTATTTGTGATAGGAGTAATTCCTGGGG
CAGGATTGTCTAAAACAATTTCTACGCTTGGATATATGGTTTAAAAAGTT
TTGAATTTGAATCTCTTTATTAAACAGATTTGATGGACTTTTAGTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCC
GGGGGGGGGGCCCGGGCCCCATTTCCCCCTTTTGGGGGGGGGAAAAA
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