CX294368

Overview
NameCX294368
Unique NameCX294368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
FlavSen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_TOBAC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Nicotiana tabacum GN=GSA PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.259e-62
Identity = 113/128 (88.28%), Postives = 117/128 (91.41%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL+ PGTYEYL+KITGELTQGI+DAGKK GHA+CGGYI GMFGF F EGPV NF DAKKSDT KF R YRGMLEEGVYFAPSQF
Sbjct:  323 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGPGTYEYLDKITGELTQGILDAGKKTGHAMCGGYIRGMFGFLFAEGPVNNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQF 450          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_BRANA (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Brassica napus GN=GSA PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 5.560e-62
Identity = 111/128 (86.72%), Postives = 118/128 (92.19%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK+PGTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF DAKKSDT KF + +RGMLEEGVYFAPSQF
Sbjct:  318 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKQPGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADAKKSDTEKFGKFFRGMLEEGVYFAPSQF 445          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA2_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic OS=Arabidopsis thaliana GN=GSA2 PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 2.113e-61
Identity = 110/128 (85.94%), Postives = 118/128 (92.19%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL +PGTYEYL+KIT ELT GI++AGKK GHA+CGGYISGMFGFFFTEGPVY+F DAKKSDT KF + +RGMLEEGVY APSQF
Sbjct:  317 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAKKSDTEKFGKFFRGMLEEGVYLAPSQF 444          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA1_ARATH (Glutamate-1-semialdehyde 2,1-aminomutase 1, chloroplastic OS=Arabidopsis thaliana GN=GSA1 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 4.707e-61
Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLK+ GTYEYL+KIT ELT GI++AGKK GH +CGGYISGMFGFFF EGPVYNF D+KKSDT KF R +RGMLEEGVYFAPSQF
Sbjct:  319 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKQAGTYEYLDKITKELTNGILEAGKKTGHPMCGGYISGMFGFFFAEGPVYNFADSKKSDTEKFGRFFRGMLEEGVYFAPSQF 446          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SOLLC (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 3.051e-60
Identity = 109/128 (85.16%), Postives = 116/128 (90.62%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL+  GTYE+L+KIT ELTQGI+DAGKK GHA+CGG I GMFGFFF +GP+YNF DAKKSDT KF R YRGMLEEGVYFAPSQF
Sbjct:  326 GLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQGQGTYEHLDKITAELTQGILDAGKKTGHAMCGGSIRGMFGFFFADGPIYNFSDAKKSDTEKFGRFYRGMLEEGVYFAPSQF 453          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SOYBN (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Glycine max GN=GSA1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 6.796e-60
Identity = 109/128 (85.16%), Postives = 117/128 (91.41%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRRDIME VAPAGPMYQAGTLSGNPLAMTAGI TL+R+KEPGTYEYL+KITGEL +GII+AGK+AGHAICGG+I GMFGFFFTEGPVYNF DAKKSDT KFAR + GML EGVY APSQF
Sbjct:  311 GLPVGAYGGRRDIMEKVAPAGPMYQAGTLSGNPLAMTAGIETLQRIKEPGTYEYLDKITGELVEGIIEAGKRAGHAICGGHIRGMFGFFFTEGPVYNFADAKKSDTAKFARFFWGMLAEGVYLAPSQF 438          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_ORYSJ (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Oryza sativa subsp. japonica GN=GSA PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 5.753e-59
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTY+YL+KITG+L +G++DAG K GH +CGG+I GMFGFFFT GPV+NF DAKKSDT KF R YRGMLEEGVY APSQF
Sbjct:  323 GLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYDYLDKITGDLVRGVLDAGAKTGHEMCGGHIRGMFGFFFTAGPVHNFGDAKKSDTAKFGRFYRGMLEEGVYLAPSQF 450          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_HORVU (Glutamate-1-semialdehyde 2,1-aminomutase, chloroplastic OS=Hordeum vulgare GN=GSA PE=1 SV=3)

HSP 1 Score: 221.09 bits (562), Expect = 1.417e-57
Identity = 103/128 (80.47%), Postives = 113/128 (88.28%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGR+DIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRL EPGTYEYL+K+TGEL +GI+D G K GH +CGG+I GMFGFFF  GPV+NF+DAKKSDT KF R +RGML EGVY APSQF
Sbjct:  314 GLPVGAYGGRKDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLMEPGTYEYLDKVTGELVRGILDVGAKTGHEMCGGHIRGMFGFFFAGGPVHNFDDAKKSDTAKFGRFHRGMLGEGVYLAPSQF 441          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SYNE7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus elongatus (strain PCC 7942) GN=hemL PE=1 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 1.518e-51
Identity = 91/128 (71.09%), Postives = 112/128 (87.50%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGG+R+IM++VAPAGPMYQAGTLSGNPLAMTAGI TL+ L++PGTYEYL++IT  L+ G++   ++ GHA CGG +SGMFGFFFTEGPV+N+EDAKKSD  KF+R +RGMLE+G+Y APSQF
Sbjct:  278 GLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF 405          
BLAST of CX294368 vs. ExPASy Swiss-Prot
Match: GSA_SYNJA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain JA-3-3Ab) GN=hemL PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.982e-51
Identity = 93/128 (72.66%), Postives = 107/128 (83.59%), Query Frame = 3
Query:   12 GLPVRAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKEPGTYEYLNKITGELTQGIIDAGKKAGHAICGGYISGMFGFFFTEGPVYNFEDAKKSDTTKFARIYRGMLEEGVYFAPSQF 395
            GLPV AYGGRR+IMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL  L+ PGTYEYL +IT +L  G++   ++ GH +CGGY+ GMFGFFFT GPV N+E+AK+SD  KFAR +RGMLE GVY APSQF
Sbjct:  281 GLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLDILRRPGTYEYLERITEQLATGLLQIAQETGHEMCGGYLPGMFGFFFTAGPVRNYEEAKRSDLQKFARFHRGMLERGVYLAPSQF 408          
The following BLAST results are available for this feature:
BLAST of CX294368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_TOBAC3.259e-6288.28Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_BRANA5.560e-6286.72Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA2_ARATH2.113e-6185.94Glutamate-1-semialdehyde 2,1-aminomutase 2, chloro... [more]
GSA1_ARATH4.707e-6185.94Glutamate-1-semialdehyde 2,1-aminomutase 1, chloro... [more]
GSA_SOLLC3.051e-6085.16Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SOYBN6.796e-6085.16Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_ORYSJ5.753e-5982.03Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_HORVU1.417e-5780.47Glutamate-1-semialdehyde 2,1-aminomutase, chloropl... [more]
GSA_SYNE71.518e-5171.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_SYNJA1.982e-5172.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC05015G12SK FlavSen1 Citrus clementina cDNA clone C05015G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX294368 ID=CX294368; Name=CX294368; organism=Citrus clementina; type=EST; length=426bp
TTCGGCACGAGGGGCTGCCAGTTCGTGCTTATGGAGGAAGAAGGGATATT
ATGGAGATGGTGGCACCGGCAGGCCCAATGTACCAGGCTGGGACCTTAAG
TGGGAATCCATTGGCAATGACCGCTGGGATACACACCCTTAAACGATTGA
AGGAGCCAGGAACTTATGAATACTTGAATAAGATCACAGGTGAACTTACT
CAAGGCATCATTGATGCTGGAAAGAAAGCTGGGCATGCCATTTGTGGAGG
GTATATAAGTGGGATGTTTGGATTTTTCTTTACCGAAGGGCCTGTTTACA
ACTTCGAGGATGCAAAGAAGAGTGATACCACAAAGTTTGCAAGAATTTAC
AGGGGAATGCTGGAGGAAGGTGTATACTTCGCACCTTCACAGTTTAGAGG
CTGGGTTCACAAGCTTGGCACAATCA
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